DN617426

Overview
NameDN617426
Unique NameDN617426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5722 contig Csv1_Contig5722:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 3.500e-80
Identity = 137/165 (83.03%), Postives = 152/165 (92.12%), Query Frame = 2
Query:   89 MTPALISASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            ++P  I+++ V +PELVV EV++ INASRRNLG LSCGTGNPIDDCWRCDP WEKNRQRLADCAIGFGK+A+GGRDG+IYVVTD  D DVVNPKPGTLR+AVIQDEPLWIIFARDM I+LKEELIMNSFKTIDGRGASVHIAGG CIT+QYVTNIIIHG+NIHDC
Sbjct:   20 LSPTFIASTPVSEPELVVQEVNEKINASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPGTLRHAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDC 184          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 2.773e-77
Identity = 136/164 (82.93%), Postives = 150/164 (91.46%), Query Frame = 2
Query:  101 LISASAVPDPELVVHEVHKSINAS---RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            L  +S VPDPE VV EVHKSINAS   RR LGYLSC TGNPIDDCWRCDP+WE++RQRLADCAIGFGKNA+GGRDGRIYVVTD G+ + V+PKPGTLR+AV+QDEPLWIIF RDMTI+LKEELIMNSFKTIDGRGASVHI+GGPCITIQYVTNIIIHG++IHDC
Sbjct:   21 LFLSSPVPDPESVVEEVHKSINASVAGRRKLGYLSCTTGNPIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLRHAVVQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHDC 184          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.054e-76
Identity = 134/164 (81.71%), Postives = 147/164 (89.63%), Query Frame = 2
Query:   98 ALISASAVPDPELVVHEVHKSINAS--RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            AL S+  V DPELVV EVH+ IN S  RR LG+ SCG+GNPIDDCWRCD +WEKNR+RLADC IGFGKNA+GGRDG IYVVTDPG+ D VNP+PGTLRYAVIQDEPLWIIF RDMTI+LKEELIMNSFKT+DGRGASVHI+GGPCITIQYVTNIIIHGL+IHDC
Sbjct:   43 ALASSLPVSDPELVVEEVHRKINESISRRKLGFFSCGSGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPRPGTLRYAVIQDEPLWIIFKRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLHIHDC 206          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 1.683e-74
Identity = 127/162 (78.40%), Postives = 142/162 (87.65%), Query Frame = 2
Query:   98 ALISASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            A+ S+S    P  +V+EVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNW  NRQRLADCAIGFGKNA+GGR+GRIYVVTDPG+ D VNP PGTLRYAVIQDEPLWIIF RDM I+L++EL+MNS KTIDGRG +VHI  GPCITI Y +NIIIHG++IHDC
Sbjct:   16 AIASSSPSRTPHAIVNEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWANNRQRLADCAIGFGKNAMGGRNGRIYVVTDPGNDDPVNPVPGTLRYAVIQDEPLWIIFKRDMVIQLRQELVMNSHKTIDGRGVNVHIGNGPCITIHYASNIIIHGIHIHDC 177          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 2.602e-67
Identity = 115/159 (72.33%), Postives = 133/159 (83.65%), Query Frame = 2
Query:  125 DPELVVHEVHKSINAS------RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            DP++V  EV K +  S      RR LG+ SCGTGNPIDDCWRCD NW KNR+RLADC IGFG+NA+GGRDGR Y+VTDP D DVVNPKPGTLR+AVIQ+EPLWI+F RDM I LK+ELIMNSFKTID RG++VHIA G CITIQ++TN+IIHGL+IHDC
Sbjct:   88 DPDMVADEVAKLVQMSEQNRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDC 246          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 1.686e-66
Identity = 113/162 (69.75%), Postives = 134/162 (82.72%), Query Frame = 2
Query:   98 ALISASAVPDPELVVHEVHKSINASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            A+ +   V D  L + E+    +  RR LGY +CGTGNPIDDCWRCDPNW KNR+RLADC IGFG+NA+GGRDGR YVVTDP D + VNP+PGTLR+AVIQD PLWI+F RDM I+LK+ELI+NSFKTIDGRGA+VHIA G CITIQ+VTN+I+HGL+IHDC
Sbjct:   44 AVTNPDEVADEVLALTEMSVRNHTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIVHGLHIHDC 205          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.686e-66
Identity = 114/140 (81.43%), Postives = 124/140 (88.57%), Query Frame = 2
Query:  164 NASRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            NASRR+L YLSC TGNPIDDCWRCDPNWE NRQRLADCAIGFGKNA+GGR GRIYVVTDP + D VNP+PGTLRYAV Q+EPLWIIF RDM IRLK+ELI+ SFKTIDGRG+SVHI  GPC+ I Y TNIIIHG+NIHDC
Sbjct:   46 NASRRSLAYLSCRTGNPIDDCWRCDPNWETNRQRLADCAIGFGKNAIGGRKGRIYVVTDPANDDPVNPRPGTLRYAVTQEEPLWIIFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHDC 185          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 8.370e-66
Identity = 117/159 (73.58%), Postives = 130/159 (81.76%), Query Frame = 2
Query:  116 AVPDPELVVHEVHKSINAS--RRNLGYLS-CGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            AV DPE +   V  SI  S  RR LG+ S C TGNPIDDCWRCD  W + R+RLADCAIGFG+NAVGGRDGR Y+VTDP D+D V PKPGTLRYAVIQDEPLWI+F RDM I L +ELIMNSFKTIDGRG +VHIAGG C+T+QYVTNIIIHG+NIHDC
Sbjct:   36 AVKDPEEIAAMVDMSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGGRDGRYYIVTDPSDHDPVTPKPGTLRYAVIQDEPLWIVFKRDMVITLSQELIMNSFKTIDGRGVNVHIAGGACLTVQYVTNIIIHGINIHDC 194          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 7.085e-65
Identity = 115/158 (72.78%), Postives = 130/158 (82.28%), Query Frame = 2
Query:  116 AVPDPELVVHEVHKSINAS--RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            AV +P+ V   V  SI  S  RR LGY SC TGNPIDDCWRCD  W+  R+RLADC+IGFG+NA+GGRDGR YVVTDPGD D VNP PGTLR+AVIQDEPLWIIF RDM I LK+ELIMNSFKTIDGRG +VHIA G C+TIQYVTNII+HG+++HDC
Sbjct:   35 AVENPDEVAAMVDMSIRNSTERRRLGYFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRFYVVTDPGDDDPVNPIPGTLRHAVIQDEPLWIIFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVTNIIVHGIHVHDC 192          
BLAST of DN617426 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 3.516e-64
Identity = 114/158 (72.15%), Postives = 128/158 (81.01%), Query Frame = 2
Query:  116 AVPDPELVVHEVHKSINAS--RRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGRIYVVTDPGDYDVVNPKPGTLRYAVIQDEPLWIIFARDMTIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDC 583
            AV +PE V   V   I  S  RR LG+ SC TGNPIDDCWRCD NW   R+RLA+CAIGFG+NA+GGRDGR YVVTDP D+D VNP+PGTLR+AVIQD PLWI+F RDM I L +ELIMNSFKTIDGRG +V IAGG CITIQYVTNIIIHG+N+HDC
Sbjct:   59 AVKNPEEVAAMVDMKIKNSTERRRLGFFSCATGNPIDDCWRCDRNWHLRRKRLANCAIGFGRNAIGGRDGRYYVVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVFKRDMVITLTQELIMNSFKTIDGRGVNVAIAGGACITIQYVTNIIIHGINVHDC 216          
The following BLAST results are available for this feature:
BLAST of DN617426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL5_ARATH3.500e-8083.03Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL18_ARATH2.773e-7782.93Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL22_ARATH1.054e-7681.71Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL_ZINEL1.683e-7478.40Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL15_ARATH2.602e-6772.33Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL1_ARATH1.686e-6669.75Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL11_ARATH1.686e-6681.43Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL14_ARATH8.370e-6673.58Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH7.085e-6572.78Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL10_ARATH3.516e-6472.15Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01D02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617426 ID=DN617426; Name=DN617426; organism=Citrus sinensis; type=EST; length=585bp
CAACAACAAGAAGAGGAAATTAAACCGGAAAAGAAAAAAAAAAATGGCAA
TCCCTTCTCCTTCTCTTAGCATCTTCCTCCTCTTTCTCATGACCCCAGCT
CTCATTTCAGCTTCCGCAGTTCCGGACCCAGAATTAGTCGTACACGAAGT
ACACAAGAGCATCAATGCGTCTAGGAGGAACCTAGGTTACTTGTCTTGCG
GAACCGGCAATCCGATTGACGATTGCTGGCGGTGCGACCCCAACTGGGAG
AAGAACCGGCAAAGGCTGGCGGATTGTGCGATTGGGTTCGGCAAGAATGC
GGTTGGTGGGCGTGATGGTAGAATTTATGTGGTCACTGACCCTGGTGACT
ATGATGTCGTAAATCCTAAACCCGGAACTCTAAGGTACGCTGTGATCCAA
GATGAGCCGTTATGGATCATTTTCGCTCGTGATATGACCATCAGATTGAA
GGAAGAGTTGATCATGAACTCTTTCAAGACCATCGACGGTCGGGGAGCCA
GTGTGCACATAGCTGGTGGTCCATGCATTACCATACAGTACGTGACCAAC
ATTATTATCCATGGGTTAAACATACACGACTGTAA
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