DN617419

Overview
NameDN617419
Unique NameDN617419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4400 contig Csv1_Contig4400:113..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617419 vs. ExPASy Swiss-Prot
Match: ACLY_SHEEP (ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.490e-19
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = -2
Query:  295 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 561
            PDG+   L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A+
Sbjct:  333 PDGK--ILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of DN617419 vs. ExPASy Swiss-Prot
Match: ACLY_HUMAN (ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.490e-19
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = -2
Query:  295 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 561
            PDG+   L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A+
Sbjct:  333 PDGK--ILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of DN617419 vs. ExPASy Swiss-Prot
Match: ACLY_BOVIN (ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.490e-19
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = -2
Query:  295 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 561
            PDG+   L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A+
Sbjct:  333 PDGK--ILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of DN617419 vs. ExPASy Swiss-Prot
Match: ACLY_RAT (ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.252e-19
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = -2
Query:  298 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQA 561
            PDG+   L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A
Sbjct:  333 PDGK--ILIIGGSIANFTNVAATFKGIVRAIRDYQGSLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418          
BLAST of DN617419 vs. ExPASy Swiss-Prot
Match: ACLY_MOUSE (ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.244e-19
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = -2
Query:  295 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 561
            P+G+   L+IGG IANFT+VA TF GI+RA+R+ +  LK   + IFVRRGGPNYQ GL  M  +G+  GIP+ V+G E  MT I   A+
Sbjct:  333 PEGK--ILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of DN617419 vs. ExPASy Swiss-Prot
Match: ACLY_CAEEL (Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.236e-18
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = -2
Query:  295 PDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGICKQAI 561
            PDG+   L+IGG IANFT+VA TF GI+RA     SKLK  ++ IFVRRGGPNYQ GL +++    +L +P+ V+GPE  MT I   A+
Sbjct:  345 PDGK--VLIIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGGPNYQEGLRRIKDAATKLELPIHVFGPETHMTAIVGAAL 431          
BLAST of DN617419 vs. ExPASy Swiss-Prot
Match: ACL2_SCHPO (Probable ATP-citrate synthase subunit 2 OS=Schizosaccharomyces pombe GN=SPAC22A12.16 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.975e-17
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = -2
Query:  310 DPDGRKRALLIGGGIANFTDVATTFNGIIRALREKESKLKAARMHIFVRRGGPNYQTGLAKMRALGEELGIPLEVYGPEATMTGI 564
            +P    + L IGGGIANFT  A TF  I RAL + + KL A ++ I+VRR GPNYQ GL  +R  G++  +PL+VYGPE  ++GI
Sbjct:  391 EPRADGKVLFIGGGIANFTSPAVTFRAIARALGDYKDKLHAHKVSIWVRRAGPNYQEGLRVIREAGKKFDLPLKVYGPECHISGI 475          
The following BLAST results are available for this feature:
BLAST of DN617419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ACLY_SHEEP2.490e-1953.93ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV... [more]
ACLY_HUMAN2.490e-1953.93ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 ... [more]
ACLY_BOVIN2.490e-1953.93ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV... [more]
ACLY_RAT3.252e-1954.55ATP-citrate synthase OS=Rattus norvegicus GN=Acly ... [more]
ACLY_MOUSE7.244e-1952.81ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 ... [more]
ACLY_CAEEL1.236e-1852.81Probable ATP-citrate synthase OS=Caenorhabditis el... [more]
ACL2_SCHPO3.975e-1750.59Probable ATP-citrate synthase subunit 2 OS=Schizos... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01C23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617419 ID=DN617419; Name=DN617419; organism=Citrus sinensis; type=EST; length=565bp
AAAACACATTTTTCAAATAAATAGGGATCAAAAGTTCACAAATATGATGT
ACAAAGTTACAAGAGTTCAAGCCTTATTGAAAAGCATTGTCTCAAAAAAG
GACAAAAAAATTAAAAAAGAAATAAAAAAAGGTTCAAAGTTTTTGACAAC
AATATCTCCATCGTCTGCCTCCAATGAACCCATAAATGCCAAATTATTTT
TCTCCACTAGGATGACGCAGACTTACTCTCTCGCGACACCTTAACGATGG
AGAAAAAGGAATTGTTGAATCTATGATGCCGACATGATGCAGTCAATTGC
CTGCTTGCATATGCCTGTCATCGTGGCCTCAGGGCCATAGACCTCAAGTG
GTATTCCCAGTTCCTCTCCCAGAGCACGCATCTTTGCAAGACCAGTCTGA
TAGTTCGGACCACCTCTTCGAACAAATATGTGCATTCTTGCTGCTTTTAG
TTTGGATTCCTTCTCCCTCAAAGCTCGAATAATCCCATTGAATGTTGTAG
CAACATCAGTAAAATTTGCAATACCCCCTCCAATGAGAAGGGCTCTCTTA
CGACCATCAGGATCT
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