DN617417

Overview
NameDN617417
Unique NameDN617417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:466..1075. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617417 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 9.667e-39
Identity = 84/117 (71.79%), Postives = 93/117 (79.49%), Query Frame = -2
Query:  260 ESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 610
            ESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQRLMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V  AGPS+NNYM GWLP
Sbjct:  127 ESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241          
BLAST of DN617417 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.305e-37
Identity = 82/120 (68.33%), Postives = 91/120 (75.83%), Query Frame = -2
Query:  260 ESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGL-KPAQPQGDTFFHA--LECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 610
            E+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR MEGYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   DP SVVTAGPS+NNYM GWLP
Sbjct:  129 ETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR-MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247          
BLAST of DN617417 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.639e-28
Identity = 71/120 (59.17%), Postives = 84/120 (70.00%), Query Frame = -2
Query:  260 ESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 610
            ESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ E+   YG    Q Q     FF  LECEP LQIGYQ       + AGPS+NNYM GWLP
Sbjct:  129 ESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ--DGMGAGPSVNNYMLGWLP 245          
BLAST of DN617417 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.639e-28
Identity = 69/119 (57.98%), Postives = 84/119 (70.59%), Query Frame = -2
Query:  263 ESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYM-QGWL 610
            E LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R  E  Q N  Q+ +PS     GYG +PAQ  G+ F+H LECEPTLQIGY     ++  TA  ++NNYM  GWL
Sbjct:  125 EQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATAS-TVNNYMPPGWL 242          
BLAST of DN617417 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.234e-27
Identity = 70/122 (57.38%), Postives = 84/122 (68.85%), Query Frame = -2
Query:  260 ESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDT---FFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 610
            E LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ ED    YG    Q Q ++   FF  LECEP LQ+GYQ       + AGPS NNYM GWLP
Sbjct:  129 ELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHG-MEAGPSENNYMLGWLP 248          
BLAST of DN617417 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = -2
Query:  260 ESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPSAEDCGYGLKPAQPQ----GDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 610
            ESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+        GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  128 ESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of DN617417 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = -2
Query:  260 ESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPSAEDCGYGLKPAQPQ----GDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 610
            ESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+        GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  128 ESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of DN617417 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.267e-18
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = -2
Query:  449 ESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 610
            ESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQRLMEG Q+N
Sbjct:  127 ESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGSQLN 180          

HSP 2 Score: 29.261 bits (64), Expect = 1.267e-18
Identity = 15/31 (48.39%), Postives = 18/31 (58.06%), Query Frame = -3
Query:  337 VQKIVVMGLNQLNLRAIPSFTPWNVNPHCKL 429
            + K+  M   QL LRA+ SF  W VN  CKL
Sbjct:  186 MHKLWAMAGKQLKLRAMASFILWIVNLLCKL 216          
BLAST of DN617417 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.605e-17
Identity = 59/127 (46.46%), Postives = 76/127 (59.84%), Query Frame = -2
Query:  260 ESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDTFFHALE--CEPTLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 610
            E LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E  Q++       A   GY       ++   P  G+ FFH+LE   EPTLQIG+ P     S VTA      +M  WLP
Sbjct:  128 EQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248          
BLAST of DN617417 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.162e-16
Identity = 52/126 (41.27%), Postives = 72/126 (57.14%), Query Frame = -2
Query:  263 ESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAE-----DCGYGLKPAQPQGDTFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 610
            E LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +L +   V    +    E     +  YG   A  QG   + +LEC+PTLQIGY     ++ ++V   G S   N Y+ GW+
Sbjct:  126 EQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGGGWEGGDQQNIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWM 249          
The following BLAST results are available for this feature:
BLAST of DN617417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AGL9_PETHY9.667e-3971.79Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA5.305e-3768.33MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP3_ARATH2.639e-2859.17Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_ARADE2.639e-2857.98Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL9_SINAL2.234e-2757.38Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MADS7_ORYSJ6.515e-1945.97MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI6.515e-1945.97MADS-box transcription factor 7 OS=Oryza sativa su... [more]
AGL9_SOLLC1.267e-1879.63Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MADS8_ORYSJ1.605e-1746.46MADS-box transcription factor 8 OS=Oryza sativa su... [more]
SEP2_ARATH5.162e-1641.27Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617417 ID=DN617417; Name=DN617417; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTATTCTCAAACAAGGCTTCTGTTAAATAAAGATAAGCGCGG
TGATTGAAAATACACGCACACACAACATAGCTATATATCGTCATCAGTTT
CCCTAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCCTTATGATT
GCGTGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATACAAAGTTG
CTGATTCTTATGGATCAACTGCAATACATTGACTGGTAATGCCCGCCGCT
CTCTTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACTCGGGCCTG
CTGTGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTTGCAATGTG
GGTTCACATTCCAAGGCGTGAAAGAAGGTATCGCCCTGAGGTTGAGCTGG
TTTAAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTGAAGTGTGT
TCACTTGGTATCCCTCCATCAACCTTTGTTTGAGGGTCTTATTTGCTTCG
CTCAGCAACTGTTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTA
CTGAGTTCTTGTTGATCTGATCTGCTTCAATGACATATCAAGCTGCCTTT
CAAGTGACTCA
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