DN617412

Overview
NameDN617412
Unique NameDN617412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617412_ssr73 microsatellite DN617412_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5720 contig Csv1_Contig5720:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617412 vs. ExPASy Swiss-Prot
Match: ATP7_ARATH (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 5.602e-93
Identity = 173/240 (72.08%), Postives = 202/240 (84.17%), Query Frame = 3 
Query:  111 MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 830
            MA+ASR  S+SKQL    VILQ+QHAI VR FA EAA    KGDEMLK +F D+K KF+ A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR YLL L+EIR RRGL DE GAEAMM +ALEKVEK+IKKPL+R+DKKGM LL AEF+K NKKLGIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct:    1 MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240
The following BLAST results are available for this feature:
BLAST of DN617412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP7_ARATH5.602e-9372.08Probable ATP synthase 24 kDa subunit, mitochondria... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01C19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617412 ID=DN617412; Name=DN617412; organism=Citrus sinensis; type=EST; length=866bp
CAGTCTCCCACCTCAAAGGCTCAAAAATCAGAATCCCAAACGAACCCTAA
ACACTCTAAAAGCAGAAACCTCGAAGAAGAAGAACAACAGCTGAGGTTCT
GATTCCGATCATGGCATTTGCTTCTCGCCTCGCATCCAAATCCAAACAGC
TGTGTAGTAGTCAAGTGATACTGCAACGGCAGCATGCAATTTCAGTTCGT
TTCTTTGCAAACGAAGCTGCTCCTCAGGCTCTTAAAGGAGATGAGATGTT
GAAAAACATCTTTTTGGATGTTAAGAAGAAATTTGAGACTGCCTTGGGGG
TACTCCGGAAGGAGAAGATCACCATTGCTCCAGAGGATCCTGCTGCTGTT
TCTCAGTATGCTAATGTCATGAAGACTGTCAGAGAGAAGGCAGACTTGTT
CTCAGAATCCCAACGAATAGCGTATACCATTGAAACACGAACAGCAGGAA
TTCCAGATGCTCGAACATATTTGTTGACGCTCAAGGAAATAAGGGAGAGG
AGAGGTCTCATTGATGAGCATGGTGCTGAGGCTATGATGATGGATGCATT
GGAGAAAGTTGAAAAAGAAATTAAAAAGCCTCTTATGAGGAATGATAAGA
AGGGGATGGCTCTTCTTACAGCTGAGTTTGACAAGATTAATAAGAAGCTT
GGGATCCGAAAGGAGGATCTACCAAAGTATGAAGAACAGTTGGAACTCAA
AATTGCCAAAGCACAGTTGGAAGAATTGAAGAAGGATGCTCTTGAGGCCA
TGGAAACACAAAAGAAGAGAGAGGAATTCAAGGATGAGGAAATGGTCGAA
GTGAAGTCCTTGGATGTCAGAAACTTCCTTTGAGTCTCTGCATTTACTTT
TTACGGTTTTTGAGCA
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