DN617401 | Citrus Genome Database

Overview


Name	DN617401
Unique Name	DN617401
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	641

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DN617401 vs. ExPASy Swiss-Prot
Match: TSSC1_DANRE (Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 6.847e-19
Identity = 40/126 (31.75%), Postives = 66/126 (52.38%), Query Frame = 2

Query:  296 AAIWQIPELY---------GQLNSPQ-LELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFLDLRSMGK 625
            AA+W++P  +            N+PQ LEL+  LD  AH G + CVLW   G   +++S+ E ++ LW L  S+  A + S    +  G L + + G W P H+   +A   +++++  DLRSM +
Sbjct:   96 AAVWRMPPEWESGNHESPDDSSNNPQTLELLCHLDNSAH-GSMACVLWEPMGDGKRVISLAENHVLLWDLQESSAKATISSSATLEGKGQLKF-TAGKWSPHHNCTQLATANDTAIRGWDLRSMSQ 219

HSP 2 Score: 56.225 bits (134), Expect = 6.847e-19
Identity = 26/76 (34.21%), Postives = 42/76 (55.26%), Query Frame = 1

Query:   46 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 273
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S  P D+ + +T +
Sbjct:    9 YGLEFQARALTAQTAETDAIRFLVGTQSLKFDNQIHIIDFDDENNMINKSVLLHDAGEIWHISGSPADKAVLTTCY 84

[Close]

BLAST of DN617401 vs. ExPASy Swiss-Prot
Match: TSSC1_XENTR (Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 8.904e-19
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 1

Query:   46 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 273
            YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  EIW +S+ P D+ + +T +
Sbjct:    9 YGLEFQARALAAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNILLHHAGEIWQISASPADRNVLATCY 84

HSP 2 Score: 54.299 bits (129), Expect = 8.904e-19
Identity = 41/124 (33.06%), Postives = 63/124 (50.81%), Query Frame = 2

Query:  296 AAIWQIP-ELYG---------QLNSPQLELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFLDLRSM 619
            AA+W+IP EL G           N+  LEL+  LD  AH G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + S G W P H+   VA   +++++  D+RSM
Sbjct:   96 AAVWRIPKELQGGNHESPDDTSSNAQALELLCHLDNTAH-GNMACVTWEPLGDGKKLLSLADNYLMIWDLQESSTKSVLSSSVTLEGKGQLRFTS-GKWSPHHNCTQVATANDTAIRGWDIRSM 217

[Close]

BLAST of DN617401 vs. ExPASy Swiss-Prot
Match: TSSC1_DICDI (Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.157e-18
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1

Query:   46 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 273
            YGL  + R +S + A+ D   FL GT +L+EENE+ LL  +  G  + C  +F HP EI  ++SCPFD  +F +V+
Sbjct:   14 YGLSQKTRALSHITAEADVNRFLVGTTALREENEIALLE-AKEGEGVRCLSIFPHPKEIHSITSCPFDSSLFFSVY 88

HSP 2 Score: 44.669 bits (104), Expect = 1.157e-18
Identity = 32/121 (26.45%), Postives = 62/121 (51.24%), Query Frame = 2

Query:  275 STGESYGAAIWQIPELYGQLNSPQLELIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWS-LDCSNKNAQVQSKQSSGMLHYLSGGAWDPHDVNAVAATCESSVQFLDLRSMGKTNS 634
            +    + +++W+I E     +   +E +  L  H G I  +L   SG ++ ++S+D+ NI LWS +D  N+   +   +  G L  LS G+ +P+  N +A   + +++  D R+  +T S
Sbjct:  111 TNNNDFKSSLWRINE-----SMDSIEELFELKGHTGIIKPILCDPSGSNNFIISLDDSNIRLWSKIDDQNEPTVI---KQFGNLSKLSVGSINPNISNQLATANDVNIKGWDFRNAKETFS 223

[Close]

BLAST of DN617401 vs. ExPASy Swiss-Prot
Match: TSSC1_XENLA (Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.506e-18
Identity = 25/76 (32.89%), Postives = 43/76 (56.58%), Query Frame = 1

Query:   46 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 273
            YGL++QAR ++   A+TD   FL GT SL+ +N++H++        +    L  H  EIW + + P D+ + +T +
Sbjct:    9 YGLEFQARALTAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNVLLHHAGEIWQIGASPADRNVLATCY 84

HSP 2 Score: 54.6842 bits (130), Expect = 1.506e-18
Identity = 39/123 (31.71%), Postives = 62/123 (50.41%), Query Frame = 2

Query:  296 AAIWQIP-ELYG---------QLNSPQLELIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFLDLRSM 619
            AA+W+IP EL G           N+  LEL+  LD+   G + CV W   G   KL+S+ +  + +W L  S+  + + S    +  G L + S G W P H+   VA   +++++  D+RSM
Sbjct:   96 AAVWRIPKELQGGNHESPDDTSSNAQSLELLCHLDSTAHGNMACVTWEPLGDGKKLLSLADNYLLIWDLQESSTKSVLSSSATLEGKGQLRFTS-GKWSPHHNCTQVATANDTAIRGWDIRSM 217

[Close]

BLAST of DN617401 vs. ExPASy Swiss-Prot
Match: TSSC1_RAT (Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.546e-18
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1

Query:   46 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 273
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T +
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADKGVLATCY 84

HSP 2 Score: 54.6842 bits (130), Expect = 2.546e-18
Identity = 39/125 (31.20%), Postives = 63/125 (50.40%), Query Frame = 2

Query:  296 AAIWQIPELY--GQLNSPQ--------LELIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFLDLRSMGK 625
            AA+W++P+    G   SP+        LEL+  LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + S G W P H+   VA   +++++  D RSM +
Sbjct:   96 AAVWRMPKELESGSHESPEDPASTAQTLELLCHLDNGAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSAALEGRGQLKFTS-GRWSPHHNCTQVATASDTTLRGWDTRSMSQ 219

[Close]

BLAST of DN617401 vs. ExPASy Swiss-Prot
Match: TSSC1_HUMAN (Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 3.310e-18
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1

Query:   46 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 273
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T +
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADRGVLTTCY 84

HSP 2 Score: 54.299 bits (129), Expect = 3.310e-18
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = 2

Query:  296 AAIWQIPELY--GQLNSPQ--------LELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDP-HDVNAVAATCESSVQFLDLRSMGK 625
            AA+W++P+    G   SP         LEL+  LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + S G W P H+   VA   +++++  D RSM +
Sbjct:   96 AAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTRSMSQ 219

[Close]

BLAST of DN617401 vs. ExPASy Swiss-Prot
Match: TSSC1_PONAB (Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 4.297e-18
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1

Query:   46 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 273
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T +
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGEIWHISASPADRGVLATCY 84

HSP 2 Score: 54.299 bits (129), Expect = 4.297e-18
Identity = 42/126 (33.33%), Postives = 64/126 (50.79%), Query Frame = 2

Query:  296 AAIWQIPELY--GQLNSPQ--------LELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDP-HDVNAVAATCESSVQFLDLRSMGK 625
            AA+W++P+    G   SP         LEL+  LD  AH G + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + S G W P H+   VA   +++++  D RSM +
Sbjct:  123 AAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-GNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLEGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTRSMSQ 246

[Close]

BLAST of DN617401 vs. ExPASy Swiss-Prot
Match: TSSC1_MOUSE (Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.596e-18
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1

Query:   46 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 273
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T +
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADKGVLATCY 84

HSP 2 Score: 53.5286 bits (127), Expect = 5.596e-18
Identity = 38/125 (30.40%), Postives = 62/125 (49.60%), Query Frame = 2

Query:  296 AAIWQIPELY--GQLNSPQ--------LELIAALDAHV-GKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFLDLRSMGK 625
            AA+W++P+    G   SP         LEL+  LD    G + CV+W   G   K++S+ + +I LW L  S+  A + S    +  G L + + G W P H+   VA   +++++  D RSM +
Sbjct:   96 AAVWRMPKELESGSHESPDDPASTAQTLELLCHLDNSAQGNVACVVWEPMGDGKKVISLADSHILLWDLQPSSSQAVLASSATLEGRGQLKF-TAGRWSPHHNCTQVATASDTTLRGWDTRSMSQ 219

[Close]

BLAST of DN617401 vs. ExPASy Swiss-Prot
Match: TSSC1_MACFA (Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 3.514e-17
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1

Query:   46 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 273
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T +
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQAGEIWHISASPADRGVLATCY 84

HSP 2 Score: 50.8322 bits (120), Expect = 3.514e-17
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 2

Query:  296 AAIWQIPELY--GQLNSPQ--------LELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSKQS---SGMLHYLSGGAWDP-HDVNAVAATCESSVQFLDLRSMGK 625
            AA+W++P+    G   SP         LEL+  LD  AH   + CV+W   G   K++S+ + +I LW L  S+  A + S  S    G L + S G W P H+   VA   +++++  D R+M +
Sbjct:   96 AAVWRMPKELESGSHESPDDSSSTAQTLELLCHLDNTAH-SNMACVVWEPMGDGKKIISLADNHILLWDLQESSSQAVLASSASLGGKGQLKFTS-GRWSPHHNCTQVATANDTTLRGWDTRTMSQ 219

[Close]

BLAST of DN617401 vs. ExPASy Swiss-Prot
Match: TSSC1_GECJA (Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 5.938e-17
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1

Query:   46 YGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVF 273
            YGL++QAR ++   A+TD   FL GT SLK +N++H++        +    L     EIW +S+ P D+ + +T +
Sbjct:    9 YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGEIWHISASPADKGVLATCY 84

HSP 2 Score: 50.447 bits (119), Expect = 5.938e-17
Identity = 37/126 (29.37%), Postives = 63/126 (50.00%), Query Frame = 2

Query:  296 AAIWQIPELY----------GQLNSPQLELIAALD--AHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQVQSK---QSSGMLHYLSGGAWDP-HDVNAVAATCESSVQFLDLRSMGK 625
            AA+W++P+               N+  LEL+  LD  AH G +  VLW   G   KL+S+ + ++ LW L  S+  A + +    +  G L + S G W P H+   VA   +++++  D+R+M +
Sbjct:   96 AAVWRMPKELESGSHESPDDSSSNAQTLELLCHLDNTAH-GNMAGVLWEPMGDGKKLISLADNHLLLWDLQESSSKAVLSNSAALEGKGQLKFTS-GRWSPHHNCTQVATANDTAIRGWDIRTMSQ 219

The following BLAST results are available for this feature:

BLAST of DN617401 vs. ExPASy Swiss-Prot

BLAST of DN617401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10


Match Name	E-value	Identity	Description
TSSC1_DANRE	6.847e-19	31.75	Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1	[more]
TSSC1_XENTR	8.904e-19	34.21	Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 ...	[more]
TSSC1_DICDI	1.157e-18	42.11	Protein tssc1 homolog OS=Dictyostelium discoideum ...	[more]
TSSC1_XENLA	1.506e-18	32.89	Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1	[more]
TSSC1_RAT	2.546e-18	34.21	Protein TSSC1 OS=Rattus norvegicus GN=Tssc1 PE=2 S...	[more]
TSSC1_HUMAN	3.310e-18	34.21	Protein TSSC1 OS=Homo sapiens GN=TSSC1 PE=1 SV=2	[more]
TSSC1_PONAB	4.297e-18	34.21	Protein TSSC1 OS=Pongo abelii GN=TSSC1 PE=2 SV=1	[more]
TSSC1_MOUSE	5.596e-18	34.21	Protein TSSC1 OS=Mus musculus GN=Tssc1 PE=1 SV=1	[more]
TSSC1_MACFA	3.514e-17	34.21	Protein TSSC1 OS=Macaca fascicularis GN=TSSC1 PE=2...	[more]
TSSC1_GECJA	5.938e-17	34.21	Protein TSSC1 OS=Gecko japonicus GN=TSSC1 PE=2 SV=...	[more]

Properties


Property Name	Value
Genbank description	UCRCS11_01C13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C13, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN617401 ID=DN617401; Name=DN617401; organism=Citrus sinensis; type=EST; length=641bp
TCGAATCGAAGTGCAACAATGCAAGGAGGATCTTCAGGCATAGGCTATGG
TCTCAAGTATCAAGCTAGATGCATATCAGATGTCAAAGCAGACACGGATC
ACACCAGCTTCCTCACTGGAACTCTCAGCCTCAAAGAAGAGAACGAGGTG
CATTTGCTTCGGCTTTCATCCGGTGGAACCGAGCTCATTTGCGAGGGTTT
GTTCTCGCATCCTAACGAAATATGGGACCTCAGTTCGTGTCCGTTCGATC
AACGGATTTTCTCCACTGTTTTTTTCCACTGGTGAGTCATATGGGGCAGC
AATATGGCAAATTCCAGAGTTGTATGGCCAGCTAAATTCACCTCAGTTGG
AGCTTATCGCCGCTCTTGATGCACATGTTGGTAAGATTAATTGCGTTCTT
TGGTGGTCATCTGGAAGACATGATAAATTGGTCAGCATAGACGAGGAAAA
TATTTTCTTGTGGAGCTTAGATTGTTCAAACAAGAATGCCCAGGTACAAT
CTAAACAGTCATCTGGTATGCTGCATTATTTATCTGGTGGAGCATGGGAT
CCGCATGATGTAAATGCTGTCGCAGCGACTTGTGAATCATCAGTCCAGTT
TTTGGATCTCAGATCAATGGGGAAGACAAATTCATCGAGCA