DN617344

Overview
NameDN617344
Unique NameDN617344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:1209..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.215e-29
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.215e-29
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.215e-29
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.215e-29
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.215e-29
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.215e-29
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.587e-29
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF+HWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA_WHEAT (Tubulin alpha chain OS=Triticum aestivum GN=TUBA PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.536e-29
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSV EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.536e-29
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSVAEVFSRIDHKFDLMY KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYTKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of DN617344 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.536e-29
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = -1 
Query:  235 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 420
            VQRAVCMISNSTSV EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  371 VQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of DN617344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
TBA_PRUDU1.215e-29100.00Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]
TBA6_ARATH1.215e-29100.00Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA2_ARATH1.215e-29100.00Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA1_PEA1.215e-29100.00Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE... [more]
TBA1_GOSHI1.215e-29100.00Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA1_ANEPH1.215e-29100.00Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA2_GOSHI1.587e-2998.39Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA_WHEAT3.536e-2998.39Tubulin alpha chain OS=Triticum aestivum GN=TUBA P... [more]
TBA4_GOSHI3.536e-2998.39Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA3_HORVU3.536e-2998.39Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617344 ID=DN617344; Name=DN617344; organism=Citrus sinensis; type=EST; length=420bp
TTTTTTTTTTTTATAGAACCCATAAACTTGATAAGCATAACAAATTTCAA
CAAGCTTTGAAATTGAGCGAGAATCAAAGAGAGGAATAAGGTTTTCAACA
CAAAATAAAGGCACGAAGCGTCACTAAAGCACAAGACATCATACTAAAAC
GCACAGATAATTGCACACTTAGATCCCTCAGTCCTCCTCACCATAATCTT
CCTCGCCCTCGGCAGACTCTGCACCCACCTCCTCATAATCCTTCTCAAGG
GCAGCAAGATCCTCACGAGCCTCAGAGAACTCTCCTTCTTCCATACCCTC
GCCAACATACCAGTGGACGAAAGCACGCTTTGCATACATAAGATCAAACT
TGTGGTCAATGCGAGAGAACACCTCTGCCACACTGGTGGAGTTGGAGATC
ATGCAAACAGCCCTCTGCAC
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