DN617316

Overview
NameDN617316
Unique NameDN617316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10775 contig Csv1_Contig10775:237..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617316 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 8.790e-42
Identity = 109/214 (50.93%), Postives = 124/214 (57.94%), Query Frame = 1 
Query:  115 DPDFSGS--ARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------VEITSGDDIALV--DGLKN-VQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 681
            DPD  GS      + R+ A+  I +S    +G+SS I RFPPNFVRQLS KARRNCSNIGVAQI                                                  V + S D+  +V  +G++  +    L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQIVAAKWSNNPSSALPSAAAAAATSSASAVSSAASAAAASSAAAAPVAAAPPVVLKSVDEEVVVAEEGIREKIGSVQLTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVV 236
The following BLAST results are available for this feature:
BLAST of DN617316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH8.790e-4250.93Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01A18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617316 ID=DN617316; Name=DN617316; organism=Citrus sinensis; type=EST; length=682bp
GACCGAGAGAGCAAAGCCGCCGTTCAATACGACGTCGTAATGGCCGTGTC
CTCATGTTCGAGTCAAAAAATTTTGTCCTTCTCTTCTTCATGTTCGTCTT
TTGAGTGCCGGTCCGATCCCGACTTCTCGGGCTCCGCTCGGTTTGATAAA
CCGAGGATCTCGGCGGCGCGAGTCATTGGAGCCTCGACGGCGTCGTTTAG
CGGCGTGTCGTCTCTGATTTTCAGGTTTCCGCCGAACTTCGTACGCCAGC
TTAGCACGAAGGCCAGGAGGAACTGCAGCAACATCGGCGTGGCGCAAATC
GTGGCGGCTTCGTGGTCGAACAGTGTGGGTTCCGGCTCTAACTCGGCGGC
GGCTACAGCCGCTTCCGCTGCCCCGGCCCCGCCCGCCCCCGTCGAGATCA
CGAGCGGCGATGACATCGCGCTGGTTGACGGATTGAAAAATGTACAGCTG
GAAGCCCTCGCTGATTTGAAAAACGAGGCTTCGTTTTTGAGCTCCGATGG
GAGCCTTGCAATTCATGCCGGTGAAAGATTAGGTCGTGGTATAGTAACAG
ATGCAATTACTACCCCAGTGGTGAATACTTCTGCTTACTTCTTTAAGAAA
ACTGCTGAGCTTATTGATTTCAAAGAGAAACGTCGTGCAAGTTTTGAATA
TGGGAGGTATGGAAACCCAACAACTGTGGTCG
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