DN617309

Overview
NameDN617309
Unique NameDN617309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5709 contig Csv1_Contig5709:1..380. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617309 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.616e-29
Identity = 74/120 (61.67%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   32 MSPVRLPTSC--LFQTAPTRIKFPLIKSPGSLVSRS-VSKAFGLKSSS-FKVSAMADYKVKLIGPDGEENEFDAPDDAHILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDLSYGSFL 379
            MS     TSC  L     T+     +KSP SL   S V+K   LK+S    VSAMA YKVKL+GP+GEE+EFDAPDDA+ILD+AE AG+ELPYSCRAGACSTCAG + SGSVD S GSFL
Sbjct:    1 MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120          
BLAST of DN617309 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.572e-24
Identity = 55/87 (63.22%), Postives = 71/87 (81.61%), Query Frame = 2
Query:  125 SRSVSKAFGLKSSSFKVSAM--ADYKVKLIGPDGEENEFDAPDDAHILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDLSYGSFL 379
            ++ VS++FGLK S+    A   A YKVKL+GPDG+E+EF+  DD +ILD+AE+AG++LPYSCRAGACSTCAG +VSG+VD S GSFL
Sbjct:   37 TKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFL 123          
BLAST of DN617309 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.605e-23
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 2
Query:  185 ADYKVKLIGPDGEENEFDAPDDAHILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDLSYGSFL 379
            A YKVKLIGPDG+ENEFD PDD +ILD+AE+AG++LPYSCRAGACSTCAG +  G VD S GSFL
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFL 66          
BLAST of DN617309 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.592e-22
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 2
Query:  125 SRSVSKAFGLK-SSSFKVSAMAD-YKVKLIGPDGEENEFDAPDDAHILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDLSYGSFL 379
            +R  ++A G + SS F  SA A  +KVKL+GPDG E+EF+APDD +IL++AE AG+ELP+SCRAG+CSTCAG M +G VD S GSFL
Sbjct:   37 ARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFL 123          
BLAST of DN617309 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.303e-22
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 2
Query:  185 ADYKVKLIGPDGEENEFDAPDDAHILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDLSYGSFL 379
            A YKVKLIGP+GEENEF+  DD  ILD+AE+AG++LPYSCRAGACSTCAG +V G VD S GSFL
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFL 66          
BLAST of DN617309 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.349e-20
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  116 SLVSRSVSKAFGLKSSSFK---VSAMADYKVKLIGPDGEENEFDAPDDAHILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDLSYGSFL 379
            SL S +    FGLKS + +   V+AMA YKVK I P+GE  E +  DD ++LD+AE+AG++LPYSCRAG+CS+CAG +VSGSVD S  SFL
Sbjct:   27 SLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGEL-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFL 116          
BLAST of DN617309 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.068e-20
Identity = 50/91 (54.95%), Postives = 68/91 (74.73%), Query Frame = 2
Query:  116 SLVSRSVSKAFGLKSSSFK---VSAMADYKVKLIGPDGEENEFDAPDDAHILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDLSYGSFL 379
            SL   +    FGLKSS+ +   V+AMA YKVK I P+GE+ E +  +D ++LD+AE+AG++LPYSCRAG+CS+CAG +VSGS+D S  SFL
Sbjct:   27 SLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFL 116          
BLAST of DN617309 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 48/80 (60.00%), Postives = 65/80 (81.25%), Query Frame = 2
Query:  146 FGLKSSSFK--VSAMADYKVKLIGPDGEENEFDAPDDAHILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDLSYGSFL 379
            FGLKSS+ +  V+AMA YKV L+ P+G++ E + PDD +ILD+AE+AG++LPYSCRAG+CS+CAG + SGSV+   GSFL
Sbjct:   37 FGLKSSASRGRVTAMAAYKVTLVTPEGKQ-ELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFL 115          
BLAST of DN617309 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.234e-20
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 2
Query:  146 FGLKSSSF-KVSAMADYKVKLIGPDGEENEFDAPDDAHILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDLSYGSFL 379
            FGLKS++  KV+ MA YKVKLI PDG   EFD PD+ +ILD AE+AG +LPYSCRAG+CS+CAG +  G+VD + G+FL
Sbjct:   34 FGLKSANGGKVTCMASYKVKLITPDGPI-EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFL 111          
BLAST of DN617309 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.597e-19
Identity = 47/79 (59.49%), Postives = 61/79 (77.22%), Query Frame = 2
Query:  146 FGLKSS-SFKVSAMADYKVKLIGPDGEENEFDAPDDAHILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDLSYGSFL 379
            FGLKS  + +++ MA YKVKLI P+G   EF+ PDD +ILD AE+ G +LPYSCRAG+CS+CAG + +GSVD S G+FL
Sbjct:   34 FGLKSGRNGRITCMASYKVKLITPEGPI-EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFL 111          
The following BLAST results are available for this feature:
BLAST of DN617309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
FER3_MAIZE3.616e-2961.67Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER3_ARATH1.572e-2463.22Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER1_RAPSA6.605e-2375.38Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER6_MAIZE5.592e-2260.92Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER2_RAPSA7.303e-2273.85Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER2_ARATH2.349e-2057.14Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER1_ARATH3.068e-2054.95Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER1_MESCR4.007e-2060.00Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_CAPAN5.234e-2062.03Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER1_SOLLC2.597e-1959.49Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617309 ID=DN617309; Name=DN617309; organism=Citrus sinensis; type=EST; length=380bp
CTGAAGCTGCCGTTTATTTTCCTGTATAGAAATGTCCCCTGTGAGACTTC
CCACATCTTGCTTATTCCAAACAGCTCCCACACGCATAAAATTTCCTCTA
ATCAAGAGCCCCGGTTCCTTGGTTTCCAGGAGTGTTTCAAAAGCTTTTGG
CTTGAAGTCTTCTTCATTCAAAGTATCTGCAATGGCAGATTACAAAGTGA
AACTAATTGGACCAGATGGAGAGGAAAACGAGTTTGATGCCCCCGACGAT
GCTCACATCCTCGACTCTGCTGAAGATGCCGGAATGGAGCTCCCCTACTC
ATGCCGCGCTGGAGCCTGCTCTACTTGCGCTGGCCTGATGGTTTCAGGCT
CTGTTGACCTATCTTATGGATCATTCCTTG
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