DN135268

Overview
NameDN135268
Unique NameDN135268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Mature Juice Sac from Navel Orange in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135268_ssr6 microsatellite DN135268_ssr6:6..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:124..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135268 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 281
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DN135268 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.779e-19
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 3
Query:   93 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 284
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DN135268 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.854e-19
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 278
            MSD CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DN135268 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.414e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTC 278
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DN135268 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.411e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 281
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DN135268 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.162e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 281
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN135268 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.162e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 281
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN135268 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 281
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DN135268 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 281
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DN135268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA9.141e-2469.70Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC6.779e-1960.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE8.854e-1967.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV1.414e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO2.411e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ9.162e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI9.162e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ8.576e-1450.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI3.259e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionwca08g12 Mature Juice Sac from Navel Orange in Vulnus5 vector Citrus sinensis cDNA clone wca08g12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135268 ID=DN135268|Name=DN135268|organism=Citrus sinensis|type=EST|length=553bp
ATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCC
AGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGG
CAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCT
ATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTT
GTCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCC
CACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACA
CATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGT
TAAGAATAATGTAAGGGTGATTAAAAAAAAGAAAAATTCTCTACTTCGTT
TTTATGATGGTCTATTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCAC
CCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATAT
GGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAATTTTAATGGTATTAT
TGT
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