DN135066

Overview
NameDN135066
Unique NameDN135066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135066_ssr12 microsatellite DN135066_ssr12:12..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:118..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN135066 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.384e-24
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPSCACVNCTCG 287
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGPSC+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DN135066 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.247e-19
Identity = 45/65 (69.23%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPSCACVNCTC 284
            MSD CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG SC CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DN135066 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 3
Query:   99 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPSCACVNCTCGS 290
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG +CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of DN135066 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.780e-17
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPSCACVNCTC 284
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGPSCACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DN135066 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPSCACVNCTCG 287
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DN135066 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.395e-16
Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPSCACVNCTCG 287
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG SC+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN135066 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.395e-16
Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPSCACVNCTCG 287
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG SC+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN135066 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPSCACVNCTCG 287
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DN135066 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.041e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   90 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPSCACVNCTCG 287
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DN135066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA4.384e-2471.21Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE4.247e-1969.23Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC5.546e-1960.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV6.780e-1760.00Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.510e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ4.395e-1656.06Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI4.395e-1656.06Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ5.372e-1450.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI2.041e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionwca05g01 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05g01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135066 ID=DN135066; Name=DN135066; organism=Citrus sinensis; type=EST; length=568bp
GGGATCATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCT
ACTTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACAC
CTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAA
GCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACC
GTTGTTGTCATGGACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTG
CGGCCCCTCCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAG
CAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGT
GGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAGAAAAATTCTCTA
CTTCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTT
GTGTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGT
AATATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTCAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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