DN135065

Overview
NameDN135065
Unique NameDN135065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Mature Juice Sac from Navel Orange in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN135065_ssr57 microsatellite DN135065_ssr57:57..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN135065 vs. ExPASy Swiss-Prot
Match: KATAM_ORYSJ (Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.921e-12
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 2 
Query:  383 EYDNFVEQNGWKYALLDEGQRSVGPHEWDPFFSKPK 490
            E  +FVE+N WKY LL+EGQR++GPHEWDPFFSKPK
Sbjct:  527 EDKDFVEENSWKYDLLEEGQRTIGPHEWDPFFSKPK 562

HSP 2 Score: 23.483 bits (49), Expect = 1.921e-12
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  510 AKNSWKNELR 539
            AKNSWKNE R
Sbjct:  576 AKNSWKNEQR 585
[Close]
BLAST of DN135065 vs. ExPASy Swiss-Prot
Match: KATAM_ARATH (Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.491e-12
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  383 EYDNFVEQNGWKYALLDEGQRSVGPHEWDPFFSKPKKVDD 502
            EYD FVE+N WKYALL+EGQR  G H WDPFFSKPK  +D
Sbjct:  551 EYDYFVEENSWKYALLEEGQREAGGHVWDPFFSKPKPGED 590

HSP 2 Score: 21.557 bits (44), Expect = 2.491e-12
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 3 
Query:  510 AKNSWKNELR 539
            AKNSWK+E R
Sbjct:  606 AKNSWKSEQR 615
The following BLAST results are available for this feature:
BLAST of DN135065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KATAM_ORYSJ1.921e-1275.00Xyloglucan galactosyltransferase KATAMARI1 homolog... [more]
KATAM_ARATH2.491e-1272.50Xyloglucan galactosyltransferase KATAMARI1 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionwca05f12 Mature Juice Sac from Navel Orange in pTriplEx2 vector Citrus sinensis cDNA clone wca05f12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN135065 ID=DN135065; Name=DN135065; organism=Citrus sinensis; type=EST; length=553bp
GGGGGTCTGTGTTCTACAAATTTTATAGCAAAATTTTCTCCATCTCTCAC
AAAATCCAAATCAAATCAAATTAAATATCTTATCATATGTAGCCCTCATT
TTCTCATCATTTATGTTGAATCGTCGGTTTGTTCTTGAAAATCAAGATCC
TCTTCTTTTGATTTGATAGTTCAGTTACCCTTTTGGTGATTAGTCGGTTA
CAGTTTTAAAAGTTTTTTTTTAATCTTTGTTGTATTTAAGCTTCATTTCC
GGAGACTTAAGCTGAACTATCGAAACTAGGGTTAGGGTTTGTCATTTTTT
GTAATTTGCGTGGTTTTGCGAGTTGTGGGTGTTAGATTATAACTGGGATT
GTGAGTGTTTTTGGTGAAATGGGAAGCTGTTGGAATATGATAATTTTGTG
GAGCAGAATGGCTGGAAATATGCTTTGTTAGATGAAGGACAGCGTTCAGT
AGGACCTCATGAGTGGGATCCTTTCTTCTCAAAACCAAAGAAAGTAGATG
ATCGCGGTCGCAAAAAATTCATGGAAGAATGAGCTAAGAGCTTGCTCATT
CAT
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