DN134953

Overview
NameDN134953
Unique NameDN134953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2605 contig Csv1_Contig2605:133..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.070e-50
Identity = 93/105 (88.57%), Postives = 101/105 (96.19%), Query Frame = 2
Query:   98 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 412
            TVEAWNEQLQK N+TK L+VVDFTASWCGPCRFIAPFLAELAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:   13 TVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          

HSP 2 Score: 24.6386 bits (52), Expect = 7.070e-50
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:   66 AAEEGQVIGC 95
            AAEEGQVIGC
Sbjct:    2 AAEEGQVIGC 11          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.230e-47
Identity = 91/113 (80.53%), Postives = 100/113 (88.50%), Query Frame = 2
Query:   65 SSRRGTSHRVPTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 403
            +S  G      TVE WNEQLQK+NE+K LVVVDFTASWCGPCRFIAPF A+LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVGAKK+ELQ TIAKHLA
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.560e-45
Identity = 87/107 (81.31%), Postives = 97/107 (90.65%), Query Frame = 2
Query:   92 VPTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 412
            V TV+AWNE LQK  + K+L+VVDFTASWCGPC+FIA F AELAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKK+ELQQTIAKH+++ S
Sbjct:   10 VHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.119e-41
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 2
Query:   65 SSRRGTSHRVPTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 412
            SS  G       VE WNE  +K  ETK+LVVVDFTASWCGPCRFIAP LA++AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:    8 SSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.403e-33
Identity = 61/100 (61.00%), Postives = 85/100 (85.00%), Query Frame = 2
Query:   98 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 397
            T+E WNE+++ +NE+K+L+V+DFTASWC PCRFIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVGA K+E+ + + KH
Sbjct:   12 TLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.026e-32
Identity = 62/105 (59.05%), Postives = 82/105 (78.10%), Query Frame = 2
Query:   98 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 412
            + E W  +LQ++ +TK+LV VDFTA+WCGPCR I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVGAKK++L++ +A   A A+
Sbjct:   11 STEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31
Identity = 64/120 (53.33%), Postives = 85/120 (70.83%), Query Frame = 2
Query:   44 TAESRNGSSRRGTSHRVPTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 403
            TA +   +   G    V ++E W  Q++++N  K+LVV+DFTASWCGPCR +AP  A+LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVGA KEEL   +  H A
Sbjct:    7 TATATAAAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 2
Query:  104 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 415
            + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   15 DEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 2
Query:  104 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 415
            + ++ Q+ K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:   15 DEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of DN134953 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.821e-31
Identity = 59/100 (59.00%), Postives = 82/100 (82.00%), Query Frame = 2
Query:   98 TVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 397
            TV+ WNE+ QK+ ++ +L+V+DFTASWCGPCR I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VGA+K+EL   IA H
Sbjct:   12 TVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
The following BLAST results are available for this feature:
BLAST of DN134953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TRXH_RICCO7.070e-5088.57Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH2.230e-4780.53Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC3.560e-4581.31Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC3.119e-4168.97Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH1.403e-3361.00Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_PICMA2.026e-3259.05Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_WHEAT3.821e-3153.33Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_ORYSJ3.821e-3158.65Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI3.821e-3158.65Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_FAGES3.821e-3159.00Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionwca03h02 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03h02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134953 ID=DN134953; Name=DN134953; organism=Citrus sinensis; type=EST; length=656bp
CGGCCGGGGNNNNANNNCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGG
AAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCCACC
GTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCT
GGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTG
CTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTG
AAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAGTGGA
GGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGG
TGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTG
GCAACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTT
TAGAGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTA
GAGTGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTT
ACTGTTCCATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATA
TTTGTTGTTGAACCTAATTTTGACGTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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