DN134928

Overview
NameDN134928
Unique NameDN134928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134928_ssr158 microsatellite DN134928_ssr158:158..172. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN134928 vs. ExPASy Swiss-Prot
Match: FBL91_ARATH (F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.062e-35
Identity = 81/162 (50.00%), Postives = 107/162 (66.05%), Query Frame = 3 
Query:  204 EDILHNILSRLPAKSFASAACVNKSWNCVCNSILSRPRIASACSFKASAPIALQEVLDKVLLEPMRPHFAIANVGRGFNMRRTLDFLVKHLGPRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRK 689
            ED+LHNIL RLPAKSFA A+CVN+ W+ VCN ILSRP++ SA S       A +EVLDKVL EP+RP F IAN+  G NM  TL  + + +G R PII+SVV G++G++A  D+  EV+     D  +            I+LT+GYLPG+KVD IP+++ K
Sbjct:   38 EDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNPDQLRAGEEVLDKVLSEPIRPQFVIANITCG-NMEETLTLITERVGSRVPIIVSVVTGILGKEACNDKAGEVRLHSTSDDEL-----FDVANFAILLTIGYLPGMKVDIIPVIQAK 193
The following BLAST results are available for this feature:
BLAST of DN134928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBL91_ARATH4.062e-3550.00F-box/LRR-repeat protein At5g63520 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionwca03d12 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03d12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134928 ID=DN134928; Name=DN134928; organism=Citrus sinensis; type=EST; length=735bp
AACCCACTACAGTGCTGCACACGTCTCGGGTCATCGGTCGTCACGCTACA
GCCAGAGGCAGCAGCCGTTGAAATGGCCAAATTTATTCGGTGATAAAAAT
TTCACTGAAATAATTCATTTGATTCACAGCAATGGATACCGAGAAACCAT
CATCGTCGAAGAAGAAGAAGAAGACAATTGAAATCAGCAGCTTAGCTGAT
TGTGAAGATATTCTTCATAACATTCTCAGTCGGCTTCCAGCAAAATCCTT
TGCATCAGCAGCTTGCGTTAACAAATCTTGGAACTGCGTTTGCAACTCCA
TTCTCTCTCGCCCCAGAATCGCCTCTGCTTGTTCCTTCAAAGCTTCTGCC
CCAATTGCTCTACAAGAGGTTCTCGATAAGGTTCTTTTGGAGCCCATGCG
GCCGCATTTTGCCATCGCAAATGTTGGCAGAGGCTTTAACATGAGAAGGA
CTCTCGATTTTTTAGTAAAACATTTGGGTCCACGAACTCCGATTATTTTA
TCCGTTGTTCATGGAGTAATGGGAAGAGATGCTCTTACTGATGAGTTTAG
AGAGGTCAAGTTTCAGGATCATGAGGATATTGGTGTCAATCGTGGCATAT
GTACATGTGGTCAGCAGTCAGGCATTGTATTGACAGTTGGCTATTTGCCT
GGATTAAAAGTTGATGCCATTCCATTACTTCGGCGGAAAGAGATTGTGTA
GGTTCCAGTTGATGATACATATGTTGATGTATACC
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