DN134927

Overview
NameDN134927
Unique NameDN134927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134927_ssr52 microsatellite DN134927_ssr52:52..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5677 contig Csv1_Contig5677:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.722e-56
Identity = 107/117 (91.45%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:  159 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            MA+SSFKLEHPLERR AE+ RIREKYPDRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLSAEKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.722e-56
Identity = 107/117 (91.45%), Postives = 114/117 (97.44%), Query Frame = 3 
Query:  159 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            MA+SSFKLEHPLERR AE+ RIREKYPDRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLSAEKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.458e-55
Identity = 107/117 (91.45%), Postives = 113/117 (96.58%), Query Frame = 3 
Query:  159 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            MA++SFKLEHPLERR AESARIREKY DRIPVIVEKA+KTDVP+IDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIFVFVKNTLPPT +LMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.458e-55
Identity = 107/117 (91.45%), Postives = 113/117 (96.58%), Query Frame = 3 
Query:  159 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            MA++SFKLEHPLERR AESARIREKY DRIPVIVEKA+KTDVP+IDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIFVFVKNTLPPT +LMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.242e-55
Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = 3 
Query:  159 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            MA SSFKLEHPLERR  ES+RIREKYPDRIPVIVE+AE++DVP+IDKKKYLVPADL+VGQFVYVVRKRIKLSAEKAIFVFVKNTLPPT A+MSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct:    1 MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 4.690e-54
Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = 3 
Query:  159 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            MAKSSFKL+H LERR AE+ RIREKY DRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.690e-54
Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = 3 
Query:  159 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            MAKSSFKL+H LERR AE+ RIREKY DRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.365e-53
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 3 
Query:  159 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 509
            MAKSSFK+ +PLE R++ES+RIREKYPDRIPVIVEKA ++DVPDIDKKKYLVPADL+VGQFVYVVRKRIKL AEKAIFVFVKNTLPPT ALMSAIYEE+KDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.846e-53
Identity = 102/120 (85.00%), Postives = 112/120 (93.33%), Query Frame = 3 
Query:  159 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGWSF 518
            MA SSFK EHPLE+R AE+ARIREKYPDRIPVIVE+AEK+DVPDID+KKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKN LPPT A+MSAIYEE+KDEDGFLYM+YSGENTFG  F
Sbjct:    1 MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFGIFF 120
[Close]
BLAST of DN134927 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.155e-52
Identity = 101/120 (84.17%), Postives = 111/120 (92.50%), Query Frame = 3 
Query:  159 MAKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGWSF 518
            M K+SFKL +PLE R+AES RIR KYP+R+PVIVEKA ++DVPDIDKKKYLVPADL++GQFVYVVRKRIKL AEKAIFVFVKNTLPPT ALMSAIYEE+KDEDGFLYMTYSGENTFG SF
Sbjct:    1 MEKNSFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGGSF 120
The following BLAST results are available for this feature:
BLAST of DN134927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8C_ORYSJ1.722e-5691.45Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI1.722e-5691.45Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8A_ORYSJ1.458e-5591.45Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI1.458e-5591.45Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8C_ARATH4.242e-5589.74Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ4.690e-5488.89Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI4.690e-5488.89Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8A_ARATH1.365e-5388.03Autophagy-related protein 8a OS=Arabidopsis thalia... [more]
ATG8D_ARATH8.846e-5385.00Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8B_ARATH1.155e-5284.17Autophagy-related protein 8b OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionwca03d11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03d11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134927 ID=DN134927; Name=DN134927; organism=Citrus sinensis; type=EST; length=698bp
CTTAACAAAANNNNTCCTAAAATAACAAAATAAATTCTCCACAATCAACC
GATCAATCAATCAATCAATCAAATACCTTGAAACCCTACTAATTTCCTTC
TCTTCTCCGATCCACTTCTCGTGTTGTGTTGAAGAGTCATCGTAGCGTCA
GTTTCGCCATGGCCAAAAGTTCATTCAAGCTCGAGCATCCATTGGAGAGG
AGGCTGGCAGAATCTGCTCGCATTAGAGAGAAGTATCCTGACAGGATTCC
GGTGATTGTGGAGAAGGCTGAGAAGACTGATGTTCCTGACATTGACAAGA
AAAAATACCTTGTCCCAGCGGATTTATCTGTGGGACAATTTGTTTATGTT
GTCCGTAAAAGGATTAAGCTCAGTGCAGAAAAGGCCATATTTGTTTTTGT
TAAGAATACTTTACCTCCAACCGGTGCCTTGATGTCTGCTATATATGAGG
AAAACAAGGATGAAGATGGTTTTCTTTACATGACTTACAGTGGAGAGAAT
ACCTTCGGTTGGTCATTTTAAGAGCAAAGGCAACAAGCCATGTATCATAA
AATTTGAAAGTTGTATATTCTCAGTTGATCCCTTTTAAGCCATTCCCAGA
CATGTTCACTGATATCTTGTTTTTATTTTGGGTTGATTGCATCAGTTGAT
AGAAGTAACTCTCGTTAAAATTGGCCCTTAGCGGTAGATATTGAATGG
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