DN134916

Overview
NameDN134916
Unique NameDN134916
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134916_ssr8 microsatellite DN134916_ssr8:8..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9766 contig Csv1_Contig9766:21..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN134916 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.716e-22
Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 2 
Query:   77 ALLIILLQFSTNLASNPSDNSNIEYIRTSCSGTIYRRLCYRSLSVYAAKIKSNPKTLANTALNITLKATKSTSRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDS 409
            ALL+IL   S   A+        ++I+TSC+ T Y  +C +SLS YA  I++NP+ LA+TAL ++L  T+     M ++++F G+  R+ A A+ DC+E + DS+D +  S
Sbjct:   12 ALLVILAAASAAPAN--------QFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYA-AIHDCLEEVEDSLDRVSRS 113

HSP 2 Score: 50.0618 bits (118), Expect = 6.716e-22
Identity = 21/52 (40.38%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:  418 LGHIRNSNFWLTMGDVQTWVSAALTDEDTCVGGLQGRPLNRYTKTMIRRHIL 573
            L H + ++F   M +V+TWVSAALTDE TC+ G  G+ ++   K  +R  ++
Sbjct:  120 LSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVV 171
The following BLAST results are available for this feature:
BLAST of DN134916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA6.716e-2237.8421 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionwca03c04 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03c04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134916 ID=DN134916; Name=DN134916; organism=Citrus sinensis; type=EST; length=581bp
CCGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGGAAG
GTTCATTTTTGAGGCATGCACTAGTAGCCCTGCTCATAATTCTCCTTCAA
TTCTCCACCAACTTAGCCTCAAACCCATCAGATAATTCAAACATAGAGTA
CATAAGAACATCATGTAGTGGCACAATCTATCGCAGGTTGTGCTACCGCT
CACTCTCAGTCTATGCAGCCAAAATCAAAAGCAACCCCAAAACATTAGCC
AACACAGCTCTCAACATAACCCTTAAAGCCACAAAATCAACGTCGAGAAT
GATGGTCAAGATGTCGAGATTCCCCGGCATGATCCCGAGGGAGACCGCAG
GGGCAGTGGCAGATTGCATTGAGGTGATCGGTGACTCAATAGATGAGCTC
CAAGATTCTATGGCGAACTGGGTCACATCAGGAACTCGAATTTTTGGCTC
ACAATGGGTGATGTCCAAACATGGGTAAGCGCAGCGTTAACGGATGAAGA
TACTTGCGTGGGTGGGCTTCAAGGTAGGCCCTTGAACAGATATACGAAGA
CGATGATCAGGAGGCATATTCTTTAAAGTTG
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