DN134908

Overview
NameDN134908
Unique NameDN134908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10679 contig Csv1_Contig10679:43..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATP4_ARATH (ATP synthase subunit delta', mitochondrial OS=Arabidopsis thaliana GN=At5g47030 PE=1 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.559e-75
Identity = 137/172 (79.65%), Postives = 157/172 (91.28%), Query Frame = 3
Query:   96 EVPATPAVDSTFVESWKKVNPIMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALN 611
            E+P+T  +DSTFVE+WKKV P M+PP+TPS +M PRP TP+SIP+KLTVNFVLPY SEL+ KEVDMVI+PASTGQMGVLPGHVPTIAELKPG++SVH+G D KKYF+SSGFAF+H NSVADIIAVEAVP+D IDPS VQKGLAEF QKL+SATTDLEKAEAQIGV+VHSA+N
Sbjct:   29 ELPST--LDSTFVEAWKKVAPNMDPPQTPSAFMKPRPSTPSSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTGQMGVLPGHVPTIAELKPGIMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQKLASATTDLEKAEAQIGVEVHSAIN 198          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATP4_IPOBA (ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.320e-74
Identity = 135/172 (78.49%), Postives = 155/172 (90.12%), Query Frame = 3
Query:   96 EVPATPAVDSTFVESWKKVNPIMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALN 611
            ++PA  A DSTFVE+WKK+ P ++PPKTPS YM PRP TP+SIPSKLTVNFVLPY+SEL+ KEVDMVI+PA+TGQMGVLPGHV TIAELKPGV+SVH+GND  KYFVS GFAFIH NS ADIIAVEAVP+D+ID +LVQKGLAEF QKL++A+TD+EKAEAQIGVDVHSALN
Sbjct:   24 DLPAETAADSTFVEAWKKLIPNVDPPKTPSAYMAPRPATPSSIPSKLTVNFVLPYSSELAGKEVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVHEGNDVSKYFVSGGFAFIHANSFADIIAVEAVPLDRIDANLVQKGLAEFTQKLNTASTDVEKAEAQIGVDVHSALN 195          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATP4_PEA (ATP synthase subunit delta', mitochondrial OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.547e-67
Identity = 123/169 (72.78%), Postives = 148/169 (87.57%), Query Frame = 3
Query:  105 ATPAVDSTFVESWKKVNPIMEPPKTPSVYMTPRPQTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSALN 611
            ATPA +S+FVE+W+KV+P ++PPKTP  ++  RP  P++IP+KLTVNFVLPY+S+L+AKEVD VI+PA+TG+MGVLPGHV TIAELKPGVL+V +G DT KYFVSSGF FIH NSVADIIAVEAVP++Q+D  LVQKGL EF QKL+SATTDLEK EAQIG+DV SALN
Sbjct:   24 ATPATNSSFVEAWRKVSPNIDPPKTPLEFLKTRPPVPSTIPTKLTVNFVLPYSSQLAAKEVDSVIIPATTGEMGVLPGHVATIAELKPGVLTVQEGTDTTKYFVSSGFRFIHANSVADIIAVEAVPVNQLDRDLVQKGLQEFTQKLNSATTDLEKREAQIGIDVDSALN 192          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_DICDI (ATP synthase subunit delta, mitochondrial OS=Dictyostelium discoideum GN=atp5D PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.926e-21
Identity = 50/126 (39.68%), Postives = 78/126 (61.90%), Query Frame = 3
Query:  234 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 608
            LT + + P+ +    K+  +V +P + G  GV   HVP IAELKPGV+ + H+  D +K+F+S GFAF++P++   I  +EAVPIDQ+D   V+ GLA + Q  + A  +  KA A IG++ +  +
Sbjct:   37 LTFSLLSPHQTIYKDKKAQLVTLPGAKGIFGVAKNHVPRIAELKPGVIQINHENGDLEKFFISGGFAFVNPDASCYINTIEAVPIDQLDAEEVKNGLARYTQLYNDAQEENAKAVALIGLETYQQM 162          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_AGABI (ATP synthase subunit delta, mitochondrial OS=Agaricus bisporus GN=atpD PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.434e-21
Identity = 49/129 (37.98%), Postives = 81/129 (62.79%), Query Frame = 3
Query:  222 IPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 608
            I  KL ++  LP+ +  S+++V  V +PA +G MG+L  HVP+I  L+PGV+ V + + ++K+FVS GFA +HPN+   I  VEA P++      ++  L E N+  + + ++ +K EAQI  +V+ AL
Sbjct:   28 ISDKLKLSLALPHKAIFSSQDVVQVNIPAESGDMGILSSHVPSIEPLRPGVVEVVEDSGSQKWFVSGGFATVHPNNRLTINVVEAAPLEDFSIEAIRANLQEANKVAAGSGSEADKMEAQIEAEVYEAL 156          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_KLULA (ATP synthase subunit delta, mitochondrial OS=Kluyveromyces lactis GN=ATP16 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = 3
Query:  234 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 608
            L + F LP+ +  S   V  V +PA +GQ+G+L  HVPT+ +L PGV+ V +G+ +KK+FVS GFA + P+S   I +VEA P++   P  V+  LAE  + +SSA  ++  AEA I ++V  AL
Sbjct:   31 LKLQFALPHQTLFSGTPVTQVNLPAKSGQIGILANHVPTVEQLVPGVVEVLEGSSSKKFFVSGGFATVQPDSTLAITSVEAFPLESFSPENVRSLLAEAQKNVSSA-DEVAAAEAAIQLEVLEAL 154          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_YEAST (ATP synthase subunit delta, mitochondrial OS=Saccharomyces cerevisiae GN=ATP16 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 50/123 (40.65%), Postives = 78/123 (63.41%), Query Frame = 3
Query:  228 SKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDV 596
            S L + F LP+ +  S  EV  V +PA +G++GVL  HVPT+ +L PGV+ V +G+++KK+F+S GFA + P+S   + A+EA P++      ++  LAE  + +SS+    E AEA I V+V
Sbjct:   30 SGLKLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQENIKNLLAEAKKNVSSSDA-REAAEAAIQVEV 151          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_ASHGO (ATP synthase subunit delta, mitochondrial OS=Ashbya gossypii GN=ATP16 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = 3
Query:  234 LTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 608
            L +NF LP+ +  +   V  V +P  TGQ+G+L  HVP + +L PGV+ V +G+++KK+FVS GFA + P+S   I +VEA P+D      V+  LAE  QK + A      AEA I ++V  AL
Sbjct:   30 LKLNFALPHETLFAGTAVKQVNLPVKTGQIGILANHVPIVEQLVPGVVEVLEGSESKKFFVSGGFATVQPDSTLSITSVEAFPLDSFSAENVRALLAE-AQKNAGAADSRVAAEASIQIEVLEAL 153          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_BOVIN (ATP synthase subunit delta, mitochondrial OS=Bos taurus GN=ATP5D PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  207 QTPTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 608
            Q P + P +++  F  P     ++  V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++ +S   ++A EAV +D +D    +  L +   +L  A  +  +AE QI ++ + AL
Sbjct:   29 QAPAAGPGQMSFTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEAL 163          
BLAST of DN134908 vs. ExPASy Swiss-Prot
Match: ATPD_MOUSE (ATP synthase subunit delta, mitochondrial OS=Mus musculus GN=Atp5d PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.142e-16
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  213 PTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHPNSVADIIAVEAVPIDQIDPSLVQKGLAEFNQKLSSATTDLEKAEAQIGVDVHSAL 608
            P + P +++  F  P      +  V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++ +S   ++A EAV +D +D    +  L +   +LS A  +  +AE QI ++ + AL
Sbjct:   31 PAAGPGQMSFTFASPTQVFFDSANVKQVDVPTLTGAFGILASHVPTLQVLRPGLVVVHTEDGTTTKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAARANLEKAQSELSGAADEAARAEIQIRIEANEAL 163          
The following BLAST results are available for this feature:
BLAST of DN134908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ATP4_ARATH1.559e-7579.65ATP synthase subunit delta', mitochondrial OS=Arab... [more]
ATP4_IPOBA1.320e-7478.49ATP synthase subunit delta', mitochondrial OS=Ipom... [more]
ATP4_PEA4.547e-6772.78ATP synthase subunit delta', mitochondrial OS=Pisu... [more]
ATPD_DICDI4.926e-2139.68ATP synthase subunit delta, mitochondrial OS=Dicty... [more]
ATPD_AGABI6.434e-2137.98ATP synthase subunit delta, mitochondrial OS=Agari... [more]
ATPD_KLULA1.872e-2042.40ATP synthase subunit delta, mitochondrial OS=Kluyv... [more]
ATPD_YEAST2.070e-1940.65ATP synthase subunit delta, mitochondrial OS=Sacch... [more]
ATPD_ASHGO2.070e-1941.60ATP synthase subunit delta, mitochondrial OS=Ashby... [more]
ATPD_BOVIN1.256e-1634.07ATP synthase subunit delta, mitochondrial OS=Bos t... [more]
ATPD_MOUSE2.142e-1634.59ATP synthase subunit delta, mitochondrial OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionwca03b05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03b05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134908 ID=DN134908; Name=DN134908; organism=Citrus sinensis; type=EST; length=679bp
GGCCGGGGNNNACGCTCTCGCCGAAAATGTTCCGGCAAGCTTCACGCCTC
TTGGCTCGAGCCAGCGCGGTGACAAGGTCTCGCGCCTTCTCATCGGAGGT
CCCAGCCACGCCCGCCGTTGATTCGACTTTCGTTGAGTCATGGAAGAAAG
TGAATCCAATCATGGAGCCGCCAAAGACTCCATCGGTTTACATGACCCCT
CGCCCACAAACCCCCACTTCAATCCCCTCCAAGCTCACCGTCAACTTCGT
CCTTCCCTACGCCTCTGAGCTCTCCGCTAAGGAGGTCGATATGGTTATAG
TTCCAGCATCAACTGGGCAAATGGGTGTTCTGCCTGGGCATGTACCTACA
ATTGCAGAACTAAAGCCTGGAGTCTTATCGGTTCATGATGGTAATGATAC
CAAGAAATACTTTGTTAGCAGTGGGTTTGCATTTATCCATCCAAACTCTG
TTGCAGACATAATCGCTGTTGAGGCTGTGCCAATCGACCAAATTGACCCC
AGCTTGGTCCAGAAGGGCCTTGCAGAGTTCAACCAGAAGCTTAGTTCAGC
TACAACTGACCTGGAGAAAGCTGAAGCTCAGATAGGTGTTGATGTTCACA
GTGCACTCAACTCTGCTCTCACAGGCTAATTTTCTTCTACCTCCANNTTT
TTCTCATTTTGCTTTCTATTTTTGAGTTG
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