DN134906

Overview
NameDN134906
Unique NameDN134906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5676 contig Csv1_Contig5676:1..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN134906 vs. ExPASy Swiss-Prot
Match: PURU_BACSU (Formyltetrahydrofolate deformylase OS=Bacillus subtilis GN=purU PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 43/142 (30.28%), Postives = 74/142 (52.11%), Query Frame = 1 
Query:  253 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNV-FYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAPKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRLLERHGIPYHYLCA 675
            CPD+ GIV+ +S  +   G NI+ ++ +  + +   F+ R EF    I+  +  +   F  +++ F+   S+    ++    +VA+   K+ HCL + ++ WQ G L  EI  VISNH+         L+ER  IP+HY+ A
Sbjct:   26 CPDQPGIVSAVSAFLFEHGANIIESNQYTTDPEGGRFFLRIEFDCAGIREKKSSLQAAFASVAEKFDMTWSLTLASELK---RVAIFVSKELHCLHELIWEWQTGNLMAEIAVVISNHEEAR-----ELVERLNIPFHYMKA 159
[Close]
BLAST of DN134906 vs. ExPASy Swiss-Prot
Match: PURU_SYNY3 (Formyltetrahydrofolate deformylase OS=Synechocystis sp. (strain PCC 6803) GN=purU PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 1 
Query:  253 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAPKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRLLERHGIPYHYL 669
            CPD+ GIVA++++ I    GNI+ AD        +F +R E+  D  +  R ++   + +L++   A     ++   D   ++A+   KQ+HCL+D L+ W+ G+L  EI  +ISNH       +  + ++ GI +H L
Sbjct:   12 CPDQPGIVAQIAQFIYQNQGNIIHADQHTDFSSGLFLNRVEWQLDNFRLSRPELLSAWSQLAEQLQA---TWQIHFSDQLPRLALWVSKQDHCLLDILWRWRSGELRCEIPLIISNH-----PDLKSIADQFGIDFHCL 142
The following BLAST results are available for this feature:
BLAST of DN134906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PURU_BACSU6.449e-1330.28Formyltetrahydrofolate deformylase OS=Bacillus sub... [more]
PURU_SYNY32.451e-1230.22Formyltetrahydrofolate deformylase OS=Synechocysti... [more]
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Properties
Property NameValue
Genbank descriptionwca03b03 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca03b03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134906 ID=DN134906; Name=DN134906; organism=Citrus sinensis; type=EST; length=675bp
TACGGCCGGGGGGCCTNNCAAGACAACGAGTAAAGGCCGCCATCCGAGTT
TGGTGCGAGGTGCTGGTTGCAGCTGGCCGAGAGACACAGGAAAACAAAAG
AAAAGGAAATGACTCTGTTGCGAAGACTCTCTTCAAGCCTCCAACAAGTT
GTTAAATTTACAAACAGGTCCTTCAAGTCCCTGAAATTCCCCGGAGAGCC
CATCGAGTCCTCTGTCTCTTCCACTCTCACCCATGGAATCCACGTCTTCC
ACTGCCCTGATGAAGTTGGGATTGTAGCTAAGCTCTCGGAATGTATTGCT
TCAAGAGGTGGAAACATACTTGCAGCTGATGTTTTCGTGCCCGAGAAAAA
GAATGTCTTCTATTCCAGGAGTGAGTTTATTTTTGATCCCATTAAATGGC
CACGGGAACAAATGGATGAAGACTTCTTTAAGCTGTCTAAAATGTTCAAT
GCCATGAGATCTGTCGTCCGAGTGCCTGACATTGACCCCAAATATAAGGT
TGCAGTTCTTGCTCCAAAGCAGGAACACTGCCTTGTTGATTTCTTATATG
GATGGCAGGAAGGTAAACTTCCAGTTGAAATAACTTGTGTGATAAGTAAT
CATGATAGAGGTCCAAACTCCCATGTGATTCGCTTGCTTGAAAGGCACGG
TATTCCTTATCATTATTTGTGTGCA
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