DN134887

Overview
NameDN134887
Unique NameDN134887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5675 contig Csv1_Contig5675:1..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134887 vs. ExPASy Swiss-Prot
Match: MED7_DICDI (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum GN=med7 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.117e-27
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  250 IEGTYICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIRRRKQAVEDIKR 600
            +   Y+ FG  Y+T D+LPSL+E G +QLYPKG +I+   EL+ LNR +  + L+L + L+E P  Y  ++EDISL+F N HHLLNS RPHQAR TL+ I+  QI+++ Q+ E IK+
Sbjct:  150 VGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKKLNRSILFNYLQLLETLIENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKNQSNESIKK 265          
BLAST of DN134887 vs. ExPASy Swiss-Prot
Match: MED7_AEDAE (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.987e-23
Identity = 57/145 (39.31%), Postives = 91/145 (62.76%), Query Frame = 1
Query:  193 RLYKEYLQNPNSAXXXXXXIEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPS--QYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIRRRKQAVEDIKRRXEEAQ 618
            +LY +     N A      I+GTY  FG  ++T+D ++  LE QG ++LYP+  + D +KEL+ LN  L ++ L+L D+LV  P   Q A ++ED++L+F ++HHLLN  RPHQAR TL  ++ELQ R+R++  +  +   E+ +
Sbjct:   21 KLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFKRLYPQ--HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNEFRPHQARETLRVMMELQKRQRQETTQRFQNHLEKVR 163          
BLAST of DN134887 vs. ExPASy Swiss-Prot
Match: MED7_ANOGA (Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae GN=MED7 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.595e-20
Identity = 55/144 (38.19%), Postives = 86/144 (59.72%), Query Frame = 1
Query:  196 LYKEYLQNPNSAXXXXXXIEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPS--QYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIRRRKQAVEDIKRRXEEAQ 618
            LY +     N A      I+  Y  FG  ++ DD ++  LE QG ++LYP+  + D +KEL+ LN  L ++ L+L D+LV  P   + A ++ED+SL+F ++HHLLN  RPHQAR TL  ++ELQ R+R +  +  +   E+ +
Sbjct:   22 LYTDENIRKNRAPKPPAPIQDAYTMFGSPFSNDDNIIRPLESQGFKRLYPQ--HFDRRKELKKLNHSLLVNFLDLIDLLVHYPDSPRRAEKIEDLSLLFVHIHHLLNEFRPHQARETLRVMMELQKRQRIETAQRFQNHLEKVR 163          
BLAST of DN134887 vs. ExPASy Swiss-Prot
Match: MED7_COCIM (Mediator of RNA polymerase II transcription subunit 7 OS=Coccidioides immitis GN=MED7 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.639e-20
Identity = 51/129 (39.53%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  253 EGTYICFGGNYTTDDVLPSLEEQGVRQLYPK-------GPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIRRRKQAVEDIKRRXEEAQ 618
            EG+Y  FG   +    LPSLEEQG+ QLYP        GP+ D    L  +++ L L+ LEL  +L   P QY  ++EDI  +F N HHLLN  RPHQ+R +LI ++E Q+ + K+ + ++++  E  +
Sbjct:   73 EGSYSLFGEAQSLSTQLPSLEEQGIEQLYPSSLTNETAGPSPDHAYYLLKISKSLLLNFLELVGILSINPEQYEPKIEDIRNLFINAHHLLNLYRPHQSRESLITMMEEQLEQAKEEIREMEQTKERVE 201          
BLAST of DN134887 vs. ExPASy Swiss-Prot
Match: MED7_PIG (Mediator of RNA polymerase II transcription subunit 7 OS=Sus scrofa GN=MED7 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.927e-19
Identity = 48/123 (39.02%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  250 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIRRRKQAVEDIKRRXE 609
            I+ +Y+ FG  +  DD ++  LE QG+ +L+P     D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q R+R +  E  ++  E
Sbjct:   38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLE 158          
BLAST of DN134887 vs. ExPASy Swiss-Prot
Match: MED7_MOUSE (Mediator of RNA polymerase II transcription subunit 7 OS=Mus musculus GN=Med7 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.927e-19
Identity = 48/123 (39.02%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  250 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIRRRKQAVEDIKRRXE 609
            I+ +Y+ FG  +  DD ++  LE QG+ +L+P     D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q R+R +  E  ++  E
Sbjct:   38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLE 158          
BLAST of DN134887 vs. ExPASy Swiss-Prot
Match: MED7_HUMAN (Mediator of RNA polymerase II transcription subunit 7 OS=Homo sapiens GN=MED7 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.927e-19
Identity = 48/123 (39.02%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  250 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIRRRKQAVEDIKRRXE 609
            I+ +Y+ FG  +  DD ++  LE QG+ +L+P     D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q R+R +  E  ++  E
Sbjct:   38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLE 158          
BLAST of DN134887 vs. ExPASy Swiss-Prot
Match: MED7_BOVIN (Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus GN=MED7 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.927e-19
Identity = 48/123 (39.02%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  250 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIRRRKQAVEDIKRRXE 609
            I+ +Y+ FG  +  DD ++  LE QG+ +L+P     D KKELR LN  + ++ L+L D+L+  P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q R+R +  E  ++  E
Sbjct:   38 IKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLE 158          
BLAST of DN134887 vs. ExPASy Swiss-Prot
Match: MED7_DANRE (Mediator of RNA polymerase II transcription subunit 7 OS=Danio rerio GN=med7 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 46/123 (37.40%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  250 IEGTYICFGGNYTTDD-VLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIRRRKQAVEDIKRRXE 609
            I  +Y+ FG  +  DD ++  LE QG+ +L+P     D K+EL+ LN  + ++ L+L D+L++ P    R  ++ED+ L+F ++HHL+N  RPHQAR TL  ++E+Q R+R +  E  ++  E
Sbjct:   38 IRDSYMMFGNQFQCDDLIIRPLESQGIERLHPM--QFDHKRELKKLNMSILVNFLDLLDILIKSPGSIKREEKLEDLKLLFVHMHHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLE 158          
BLAST of DN134887 vs. ExPASy Swiss-Prot
Match: MED7_DROME (Mediator of RNA polymerase II transcription subunit 7 OS=Drosophila melanogaster GN=MED7 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18
Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  262 YICFGGNYTTDDVLPSLEEQGVRQLYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYAR--RVEDISLIFKNLHHLLNSLRPHQARATLIHILELQIRRRKQAVEDIKRRXEEAQ 618
            Y  FG  Y  D+++ SLE Q +++L P   + D +KEL+ LN  L ++ L+L D L+  P    R  +++DISL+F N+HHLLN  RPHQAR TL  ++E+Q R+R +     ++  E  +
Sbjct:   45 YSMFGIQYNNDEMIRSLESQNIKRLIPI--HFDRRKELKKLNHSLLVNFLDLIDFLILNPDSPRRTEKIDDISLLFVNMHHLLNEFRPHQARETLRVMMEMQKRQRVETAARFQKHLERVR 163          
The following BLAST results are available for this feature:
BLAST of DN134887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
MED7_DICDI5.117e-2749.57Putative mediator of RNA polymerase II transcripti... [more]
MED7_AEDAE9.987e-2339.31Mediator of RNA polymerase II transcription subuni... [more]
MED7_ANOGA1.595e-2038.19Mediator of RNA polymerase II transcription subuni... [more]
MED7_COCIM4.639e-2039.53Mediator of RNA polymerase II transcription subuni... [more]
MED7_PIG3.927e-1939.02Mediator of RNA polymerase II transcription subuni... [more]
MED7_MOUSE3.927e-1939.02Mediator of RNA polymerase II transcription subuni... [more]
MED7_HUMAN3.927e-1939.02Mediator of RNA polymerase II transcription subuni... [more]
MED7_BOVIN3.927e-1939.02Mediator of RNA polymerase II transcription subuni... [more]
MED7_DANRE1.949e-1837.40Mediator of RNA polymerase II transcription subuni... [more]
MED7_DROME2.546e-1839.67Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionwca02g06 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02g06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134887 ID=DN134887; Name=DN134887; organism=Citrus sinensis; type=EST; length=621bp
CCGGGGGTGTTTTCTNNNGCGACCAATCAAAATATTAAAGAAAGAGCAAA
ACTCGTAACTGCCAAGTTCCAAAATTGTCCATTAATTTGATCTACTGTCT
TGAATTTGAACTATTTTAGGGTTTTAGGTTTTGATTAGAGGAGAGTGATA
GCAATGGCGACAGCTGCATATCCACCACCGCCTCCCTATTACAGACTCTA
CAAAGAATACCTTCAAAACCCTAATTCCGCTCCGGAGCCTCCTCCGCCAA
TTGAAGGGACCTACATTTGCTTCGGTGGAAACTACACTACTGATGACGTG
CTGCCGAGCTTAGAAGAGCAAGGAGTGCGTCAGCTTTACCCAAAAGGACC
AAATATTGATTTCAAGAAAGAATTGAGGTCACTGAACAGAGAATTGCAGC
TGCACATATTGGAACTTTCTGATGTCCTTGTTGAGAGACCATCTCAATAT
GCCAGGAGAGTGGAAGACATATCTCTTATATTCAAGAACTTGCATCATCT
TCTCAATTCATTACGTCCTCATCAGGCTAGAGCAACATTAATACATATCC
TAGAGCTTCAGATACGGCGCCGTAAACAAGCTGTGGAGGATATAAAGAGG
CGGNNAGAAGAAGCACAACGA
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