DN134886

Overview
NameDN134886
Unique NameDN134886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5674 contig Csv1_Contig5674:1..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134886 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.141e-47
Identity = 95/139 (68.35%), Postives = 115/139 (82.73%), Query Frame = 2
Query:  185 ASSSLFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFLRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIV 598
            ++S+L +P+T +      +P+SISF GLRPL    + + LPKL+T+ +++S   ++AEL+  +VISLSTGLSLFLGRFVFFNF RENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIV
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIV 142          
BLAST of DN134886 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.278e-37
Identity = 85/117 (72.65%), Postives = 94/117 (80.34%), Query Frame = 2
Query:  254 SFQGLRPL--NTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFLRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIV 598
            SF GLRPL  N  +      L+ S+ R S    +AEL+  LVISLSTGLSLFLGRFVFFNF REN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIV
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIV 150          
BLAST of DN134886 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.439e-31
Identity = 74/121 (61.16%), Postives = 90/121 (74.38%), Query Frame = 2
Query:  236 ISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFLRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIV 598
            +SP +++   L P + RA      ++  A+R+     +A L   +VISLSTGLSL +GRFVFFNF RENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIV
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIV 125          
BLAST of DN134886 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.895e-16
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  359 NTPLVISLSTGLSLFLGRFVFFNFLRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIV 598
            NT  +IS ST   L LGRFVF  F R  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAV 96          
BLAST of DN134886 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 2
Query:  353 ELNTPLVISLSTGLSLFLGRFVFFNFLRENVAKQGLPEQ 469
            ELN  LVISLSTGLSLFLGRFVFFNF RENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
The following BLAST results are available for this feature:
BLAST of DN134886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAG_ARATH4.141e-4768.35Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL2.278e-3772.65Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU2.439e-3161.16Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU2.895e-1652.50Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA3.312e-1292.31Photosystem I reaction center subunit V (Fragment)... [more]
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Properties
Property NameValue
Genbank descriptionwca02g05 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02g05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134886 ID=DN134886; Name=DN134886; organism=Citrus sinensis; type=EST; length=600bp
TACGGCCGGGGGTATGGATCACGAGAATACGTGATCCATATCTGTGTTTC
TATNNNNNCTAAGCCTGTTCTATTTCTTGCAAAAATTTATCATAATCCAG
GAACTCAAAAACTCCATCATCCATCAAGGCATCAACCAGAACACAAAAAA
GAAGGAAAAAGAGGGGAAAAAAAGAAAAATGGCAGCCTCATCCTCCTTGT
TCACACCCTCCACCATCACCGTCCGAAAACACCAAATTTCACCCTCCAGC
ATCTCATTCCAAGGCCTAAGACCCCTCAACACCAGGGCCAAAACCCCCCT
CCCCAAGCTCGCCACCTCCGCCAAAAGAAACAGCTTCGGCGGCATTAAAG
CTGAGCTGAACACACCACTTGTCATCAGCCTCAGCACTGGCCTCTCCTTG
TTCTTGGGCAGGTTCGTCTTCTTCAACTTCCTAAGAGAGAACGTGGCCAA
ACAAGGCTTGCCCGAGCAGAATGGAGTCACCCACTTTGAAGCCGGTGATG
TTCGTGCCAAGGAATATGTTAGCCTCCTCAAATCCAACGACCCAGTTGGC
TTTAACATTGTTGATGTTCTCGCTTGGGGTTCCATTGGCCATATTGTCGC
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