DN134871

Overview
NameDN134871
Unique NameDN134871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:29..350. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134871 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.677e-40
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 2
Query:   77 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAPFV 322
            KTRGMGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIA FV
Sbjct:    3 KTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFV 84          
BLAST of DN134871 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.266e-39
Identity = 78/82 (95.12%), Postives = 78/82 (95.12%), Query Frame = 2
Query:   77 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAPFV 322
            KT GMGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIA FV
Sbjct:    3 KTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFV 84          
BLAST of DN134871 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.624e-37
Identity = 76/82 (92.68%), Postives = 76/82 (92.68%), Query Frame = 2
Query:   77 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAPFV 322
            KTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIA FV
Sbjct:    3 KTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFV 84          
BLAST of DN134871 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 7.543e-35
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 2
Query:   77 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAPFV 322
            KTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIA FV
Sbjct:    3 KTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFV 84          
BLAST of DN134871 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.608e-31
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 2
Query:   77 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAPFV 322
            K RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI  FV
Sbjct:    3 KPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFV 85          
BLAST of DN134871 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.628e-29
Identity = 61/83 (73.49%), Postives = 67/83 (80.72%), Query Frame = 2
Query:   77 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAPFV 322
            K RG+   RK +SHRR QRW DK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI  FV
Sbjct:    3 KPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFV 85          
BLAST of DN134871 vs. ExPASy Swiss-Prot
Match: RS23_DROME (40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.126e-29
Identity = 61/83 (73.49%), Postives = 67/83 (80.72%), Query Frame = 2
Query:   77 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAPFV 322
            K RG+   RK  +HRR QRWADK YKK+HLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI  FV
Sbjct:    3 KPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFV 85          
BLAST of DN134871 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.126e-29
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 2
Query:   77 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAPFV 322
            K +G+   RKLK+HR+ QRW DK YKK+H+G  WK  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI  FV
Sbjct:    3 KPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFV 85          
BLAST of DN134871 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.626e-29
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 2
Query:   77 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAPFV 322
            K RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+  FV
Sbjct:    3 KPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 85          
BLAST of DN134871 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.626e-29
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 2
Query:   77 KTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAPFV 322
            K RG+   RK  +HRR QRWADK YKK+H+G  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+  FV
Sbjct:    3 KPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 85          
The following BLAST results are available for this feature:
BLAST of DN134871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_FRAAN2.677e-4096.3440S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES2.266e-3995.1240S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH1.624e-3792.6840S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH7.543e-3589.0240S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_LUMRU6.608e-3175.9040S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_DERVA1.628e-2973.4940S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_DROME2.126e-2973.4940S ribosomal protein S23 OS=Drosophila melanogast... [more]
RS23_CAEEL2.126e-2972.2940S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_SPOFR3.626e-2971.0840S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_PAPDA3.626e-2971.0840S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionwca02e10 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02e10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134871 ID=DN134871; Name=DN134871; organism=Citrus sinensis; type=EST; length=323bp
GCGGCGTCCTCTTGCACTCTCAGCTCCAAGTCGTTCGTTACAGTAAAAAA
TCCTCTTCGTAACGCCAACANNNNGGAAGACACGTGGAATGGGAGCTGGT
CGCAAGCTGAAGAGCCACCGCAGAAGACAAAGGTGGGCTGATAAGTCATA
CAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGCTCTT
CCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTATCGAGGCAAAGCAG
CCCAACTCTGCTATCAGAAAATGCGCTCGAGTTCAGCTGATCAAGAATGG
AAAGAAGATTGCACCTTTCGTAC
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