DN134870

Overview
NameDN134870
Unique NameDN134870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length300
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2880 contig Csv1_Contig2880:40..339. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN134870 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.076e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:   55 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 300
            GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT
Sbjct:    2 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83
[Close]
BLAST of DN134870 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.076e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:   55 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 300
            GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT
Sbjct:    2 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83
[Close]
BLAST of DN134870 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.971e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:   55 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 300
            GKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT
Sbjct:    2 GKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83
[Close]
BLAST of DN134870 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.105e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:   55 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 300
            GKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83
[Close]
BLAST of DN134870 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 9.105e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:   55 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 300
            GKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83
[Close]
BLAST of DN134870 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.105e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:   55 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 300
            GKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83
[Close]
BLAST of DN134870 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.028e-40
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:   55 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 300
            GKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET+
Sbjct:    2 GKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETS 83
[Close]
BLAST of DN134870 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.028e-40
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:   55 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 300
            GKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT
Sbjct:    2 GKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83
[Close]
BLAST of DN134870 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.028e-40
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:   55 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 300
            GKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT
Sbjct:    2 GKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83
[Close]
BLAST of DN134870 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.028e-40
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:   55 GKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 300
            GKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT
Sbjct:    2 GKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83
The following BLAST results are available for this feature:
BLAST of DN134870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
EF1A_TOBAC1.076e-41100.00Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_ARATH1.076e-41100.00Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_MANES6.971e-4198.78Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_WHEAT9.105e-4198.78Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_ORYSJ9.105e-4198.78Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE9.105e-4198.78Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_VICFA2.028e-4097.56Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_SOLLC2.028e-4097.56Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A2_DAUCA2.028e-4097.56Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A1_HORVU2.028e-4097.56Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionwca02e09 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca02e09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134870 ID=DN134870; Name=DN134870; organism=Citrus sinensis; type=EST; length=300bp
CGGCCGGGGGGTTTTAGCAGAGCTCTTTCAGTTTTAAGCAAATACTTTAT
CNNGGGCAAGGAGAAGTTTCATATCAATATTGTGGTTATTGGCCATGTCG
ACTCTGGGAAGTCAACCACCACCGGTCACTTGATCTACAAGCTTGGAGGT
ATTGACAAGCGTGTGATTGAGCGGTTTGAGAAGGAAGCTGCTGAGATGAA
CAAGAGATCATTCAAGTACGCATGGGTGCTTGACAAGCTCAAGGCTGAGC
GTGAGCGTGGTATCACCATTGATATTGCTTTGTGGAAGTTCGAGACCACA
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