CX044088

Overview
NameCX044088
Unique NameCX044088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044088 vs. ExPASy Swiss-Prot
Match: U172_ARATH (UPF0172 protein At5g55940 OS=Arabidopsis thaliana GN=EMB2731 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.970e-79
Identity = 144/197 (73.10%), Postives = 169/197 (85.79%), Query Frame = -3
Query:  252 YELSQNAYIKLVLQARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANAVLSDYISSEKWQXXXXXXXXXXDISKDWLNPDLF 842
            YE+SQNAYIKLVL + +HKTAAVNGVL+GR+SP++D VVEI+DSVPLFHS+L LLP LEISLIMIEEHY AQGL IVGYFHANERFDD+EL  +AKNIG+HI RYFPQ  +LLL+NKKLEAL KGK+RSPVMQL ++DASKNW++VG+DGG +LL KEP+AN VLSDYISSEKW+          D++KDWLNP LF
Sbjct:   11 YEISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDGVVEISDSVPLFHSNLALLPPLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNNKKLEALSKGKERSPVMQLCVKDASKNWRVVGADGGSKLLLKEPSANVVLSDYISSEKWKDVTDVDDHLDDVTKDWLNPGLF 207          
BLAST of CX044088 vs. ExPASy Swiss-Prot
Match: F158A_RAT (UPF0172 protein FAM158A OS=Rattus norvegicus GN=Fam158a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.644e-18
Identity = 48/123 (39.02%), Postives = 70/123 (56.91%), Query Frame = -3
Query:  471 ELSQNAYIKLVLQARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPK 839
            E+S  AY K+ L A ++  AAVNG+LL   +   + +  + D VPLFHSHL L   LE++L  ++   +  GL + GY+HAN   DD     +A  I   I  +FP   +++LDNKKL   P+
Sbjct:    5 EISARAYGKMCLHASRYPHAAVNGLLLAPATRSGECLC-LTDCVPLFHSHLALSVMLEVALNQVDVWATQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPNAVLIMLDNKKLVTWPR 126          
BLAST of CX044088 vs. ExPASy Swiss-Prot
Match: F158A_MOUSE (UPF0172 protein FAM158A OS=Mus musculus GN=Fam158a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.644e-18
Identity = 48/123 (39.02%), Postives = 71/123 (57.72%), Query Frame = -3
Query:  471 ELSQNAYIKLVLQARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPK 839
            E+S  AY K+ L A ++  AAVNG+LL   +   + +  + D VPLFHSHL L   LE++L  ++   +  GL + GY+HAN   DD     +A  I   I  +FP+  +++LDNKKL   P+
Sbjct:    5 EISARAYGKMCLHASRYPHAAVNGLLLAPATGSGECLC-LTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPRAVLIMLDNKKLVTRPR 126          
BLAST of CX044088 vs. ExPASy Swiss-Prot
Match: F158A_HUMAN (UPF0172 protein FAM158A OS=Homo sapiens GN=FAM158A PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.658e-17
Identity = 46/123 (37.40%), Postives = 72/123 (58.54%), Query Frame = -3
Query:  471 ELSQNAYIKLVLQARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPK 839
            E+S  AY+K+ L A ++  AAVNG+ L   +P++   + + D VPLFHSHL L   LE++L  ++   +  GL + GY+HAN   +D     +A  I   I  +FP   +++LDN+KL   P+
Sbjct:    5 EISALAYVKMCLHAARYPHAAVNGLFLAP-APRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPDAVLIMLDNQKLVPQPR 126          
BLAST of CX044088 vs. ExPASy Swiss-Prot
Match: U172_DROME (UPF0172 protein CG3501 OS=Drosophila melanogaster GN=CG3501 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.841e-15
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = -3
Query:  492 YELSQNAYIKLVLQARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSI-AKNIGNHICRYFPQCAVLLLDNK 842
            Y++S+ AY KL+  A K+   AVNG+LL   + +   V EI D++PLFH  L + P  E++L++I+ H   +GL I GY+ A E F D ++D   A  I + I   F     +++DNK
Sbjct:    4 YKVSERAYAKLIFHAAKYPHQAVNGLLLAEKTSKGSQV-EIVDAIPLFHQCLYVTPMAEVALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFVVVDNK 120          
BLAST of CX044088 vs. ExPASy Swiss-Prot
Match: CX4NB_MOUSE (Neighbor of COX4 OS=Mus musculus GN=Cox4nb PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.301e-14
Identity = 55/204 (26.96%), Postives = 93/204 (45.59%), Query Frame = -3
Query:  249 ELSQNAYIKLVLQARKHKTAAVNGVLLG-RVSPQND------AVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANAVLSDYISSEKWQXXXXXXXXXXDISKDWLNPDLFK 839
            +L+  AY K+VL   K+   AVNG+L+  R  P+ +      +     D +PLFH  L L P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A++++DN K          +P + +Y +  ++ W+    D         P A  + +  + S  ++          DI  DW NP++ K
Sbjct:    5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGSHTLFVDCIPLFHGTLALTPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFGDAALIMVDNAKFTM----DCAAPTIHVYEQHENR-WRC--RDPHHDYCEDWPEAQRISASLLDSRSYETLVDFDNHLDDIRSDWTNPEINK 201          
BLAST of CX044088 vs. ExPASy Swiss-Prot
Match: CX4NB_RAT (Neighbor of COX4 OS=Rattus norvegicus GN=Cox4nb PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.699e-14
Identity = 55/204 (26.96%), Postives = 92/204 (45.10%), Query Frame = -3
Query:  249 ELSQNAYIKLVLQARKHKTAAVNGVLLG-RVSPQNDAV------VEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANAVLSDYISSEKWQXXXXXXXXXXDISKDWLNPDLFK 839
            +L+  AY K+VL   K+   AVNG+L+  R  P+ +            D +PLFH  L L P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A++++DN K          +P + +Y +  ++ W+    D         P A  + +  + S  ++          DI  DW NP++ K
Sbjct:    5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGNHTLFVDCIPLFHGTLALTPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDAALIMVDNAKFTM----DCAAPTIHVYEQHENR-WRC--RDPHHDYCEDWPEAQRISASLLDSRSYETLVDFDNHLDDIRSDWTNPEINK 201          
BLAST of CX044088 vs. ExPASy Swiss-Prot
Match: CX4NB_HUMAN (Neighbor of COX4 OS=Homo sapiens GN=COX4NB PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.434e-14
Identity = 54/207 (26.09%), Postives = 92/207 (44.44%), Query Frame = -3
Query:  249 ELSQNAYIKLVLQARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANAVLSDYISSEKWQXXXXXXXXXXDISKDWLNPDLFK 839
            +L+  AY K+VL   K+   AVNG+L+  +  P+ + +             D +PLFH  L L P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A++++DN K          +P + +Y    ++ W+    D         P A  + +  + S  ++          DI  DW NP++ K
Sbjct:    5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTALIMVDNTKFTM----DCVAPTIHVYEHHENR-WRC--RDPHHDYCEDWPEAQRISASLLDSRSYETLVDFDNHLDDIRNDWTNPEINK 204          
BLAST of CX044088 vs. ExPASy Swiss-Prot
Match: CX4NB_BOVIN (Neighbor of COX4 OS=Bos taurus GN=COX4NB PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.454e-13
Identity = 54/207 (26.09%), Postives = 91/207 (43.96%), Query Frame = -3
Query:  249 ELSQNAYIKLVLQARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANAVLSDYISSEKWQXXXXXXXXXXDISKDWLNPDLFK 839
            +L+  AY K+VL   K+   AV+G+L+  +  P+ + +             D +PLFH  L L P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A++++DN K           P + +Y    +K W+    D         P A  + +  + S  ++          DI  DW NP++ K
Sbjct:    5 KLTTQAYCKMVLHGAKYPHCAVDGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGTLALAPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTALIMVDNTKFTM----DCVVPTIHVYEHHENK-WRC--RDPHYDYCEDWPEAQRISASLLDSRSYETLVDFDNHLDDIRNDWTNPEINK 204          
The following BLAST results are available for this feature:
BLAST of CX044088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
U172_ARATH1.970e-7973.10UPF0172 protein At5g55940 OS=Arabidopsis thaliana ... [more]
F158A_RAT5.644e-1839.02UPF0172 protein FAM158A OS=Rattus norvegicus GN=Fa... [more]
F158A_MOUSE5.644e-1839.02UPF0172 protein FAM158A OS=Mus musculus GN=Fam158a... [more]
F158A_HUMAN3.658e-1737.40UPF0172 protein FAM158A OS=Homo sapiens GN=FAM158A... [more]
U172_DROME5.841e-1538.14UPF0172 protein CG3501 OS=Drosophila melanogaster ... [more]
CX4NB_MOUSE1.301e-1426.96Neighbor of COX4 OS=Mus musculus GN=Cox4nb PE=1 SV... [more]
CX4NB_RAT1.699e-1426.96Neighbor of COX4 OS=Rattus norvegicus GN=Cox4nb PE... [more]
CX4NB_HUMAN8.434e-1426.09Neighbor of COX4 OS=Homo sapiens GN=COX4NB PE=1 SV... [more]
CX4NB_BOVIN2.454e-1326.09Neighbor of COX4 OS=Bos taurus GN=COX4NB PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_15C07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15C07-E13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044088 ID=CX044088; Name=CX044088; organism=Citrus sinensis; type=EST; length=844bp
TTTTTTGATAGAAAAACAGGCTGAGTAAGATTTCCGGGAACTTCATAATG
TAATCCAAAGCAGATGTTAATGCAACAGAGCAGTTTAAAAATACAAAAAC
TTCTTAGCAAAACAAGAAACTCAGATTTGACAAATTTTCCTTTCATGTTC
ACCATGCCTCAGACCATAGGTAAATATATGTCATCATCAGTATTAACTAC
TATCAGTCTTGAAGAGGGCAAAAATACTGACGGCCATGGGCAATCTCATT
TGAAAAGGTCAGGGTTCAGCCAGTCCTTGCTAATGTCATCAAGGTGATCA
TCAAAATCTACAACATCCTGCCACTTCTCTGAAGAAATATAATCGCTTAA
AACAGCATTTGCCGCAGGCTCCTTAGTTAGCAATTGACAGCCACCATCAG
ATCCAACTAGCTTCCAGTTCTTGGATGCATCCCTTATGTAAAGCTGCATA
ACAGGACTCCGGTCTTTCCCCTTAGGTAAGGCTTCCAGCTTTTTGTTATC
TAACAAGAGAACAGCACATTGAGGAAAGTACCGGCAAATGTGATTGCCAA
TATTCTTAGCAATGCTATCAAGCTCCAAGTCATCAAACCTCTCATTTGCA
TGAAAATACCCCACAATGCCAAGACCCTGAGCGCTATAATGCTCTTCTAT
CATGATGAGGGAGATCTCGAGATTGGGGAGAAGGCCCAGGTGGGAATGAA
AGAGAGGGACGGAGTCGGCGATCTCGACGACAGCGTCGTTTTGAGGAGAG
ACTCGCCCCAGAAGGACTCCGTTGACCGCCGCCGTCTTGTGCTTTCGCGC
TTGTAGCACTAGCTTTATGTAGGCGTTTTGTGACAATTCGTATT
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