CX044068
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 7.286e-58 Identity = 122/156 (78.21%), Postives = 125/156 (80.13%), Query Frame = -1 Query: 373 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAPESLADPLPV 840 GRRI FDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF RLKTK+IELQ EGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE V VLNGSSG PESL + L + Sbjct: 767 GRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEALSI 922
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 8.907e-56 Identity = 120/157 (76.43%), Postives = 124/157 (78.98%), Query Frame = -1 Query: 373 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAPESLA-DPLPV 840 GRRI FDLD DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF+RLK K+IELQ EGYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE VTVLNGSSG P A +P+PV Sbjct: 767 GRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV 923
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 3.742e-54 Identity = 118/157 (75.16%), Postives = 123/157 (78.34%), Query Frame = -1 Query: 370 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAPESLADPLPVV 840 GRRI FDLD+DEKDSSYNRIKSLVTEELKQYFRPEFLNRL EMIVFRQLTKLEVKEIADIMLKEVF RLK K+IELQ EGYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE VTVLNG+SGAP A P P++ Sbjct: 770 GRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRLSEMIVFRQLTKLEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSA-PEPIL 925
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.331e-51 Identity = 114/160 (71.25%), Postives = 122/160 (76.25%), Query Frame = -1 Query: 373 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAP----ESLADPLPV 840 GRRI FDLDY EKDSSYNRIKSLVT+ELKQYFRPEFLNRLDEMI+FRQLTKLEVKEIADI+L+E+F+RLK K++ELQ EGYNPSYGARPLRRAIMRLLEDSM EKMLAREIKE VTVLNG SG P E D LPV Sbjct: 715 GRRIGFDLDY-EKDSSYNRIKSLVTQELKQYFRPEFLNRLDEMILFRQLTKLEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLPV 873
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.063e-36 Identity = 82/142 (57.75%), Postives = 101/142 (71.13%), Query Frame = -1 Query: 415 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNG 840 G + F+L D+ +S Y R++SLV EELKQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L EGYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK VTVL G Sbjct: 673 GGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVDVTNEGEVTVLLG 814
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.694e-36 Identity = 77/122 (63.11%), Postives = 96/122 (78.69%), Query Frame = -1 Query: 475 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 840 G + F+L D+ +S Y R++SLV EELKQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L EGYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK Sbjct: 673 GGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIK 794
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.519e-36 Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = -1 Query: 472 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 840 G + FDL D+ +S Y RIK+LV EELKQYFRPEFLNRLDE+IVFRQLTK EV EIA+IMLKEVF R+ K I+L+ EGYNP YGARPLRRA+MRLLED+++E+ LA +IKE Sbjct: 670 GGGLGFDLSEDQTESQYGRIKALVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVGEIAEIMLKEVFTRISEKGIQLEVTARFKTHLINEGYNPIYGARPLRRAVMRLLEDTLSEEFLAEKIKE 792
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.635e-33 Identity = 72/123 (58.54%), Postives = 98/123 (79.67%), Query Frame = -1 Query: 472 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 840 G + F+L+ + ++ Y+R+++LV EELKQYFRPEFLNR+DE+IVFRQLTK EV++IA IML+E+F+R+K + I LQ EGYNPSYGARPLRRA++RLLEDS+AE++L+ +IKE Sbjct: 703 GGGLGFELEENIEELQYSRMRNLVNEELKQYFRPEFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKE 825
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24 Identity = 54/110 (49.09%), Postives = 81/110 (73.64%), Query Frame = -1 Query: 478 KDSS-YNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 804 KDS+ + ++ LV EELK++FRPEFLNR+DE+IVF LTK ++ EI +M+K++ RL+ K++ L+ EGY+P YGARPLRRA+MRLLED++A++ L++ + Sbjct: 715 KDSALFEKVTELVNEELKEFFRPEFLNRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVYGARPLRRAVMRLLEDTLAQQCLSKPL 824
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.003e-23 Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = -1 Query: 475 ICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 831 I F LD DE+ +SY +K+LV EELK YFRPE LNR+DE+++FRQL K ++ EI ++ML+++ RL + L+ +GY+P+YGARPLRR + ++ED ++E LA K Sbjct: 792 IGFILDDDEEAASYTGMKALVVEELKNYFRPELLNRIDEIVIFRQLEKAQMMEILNLMLQDLKSRLVALGVGLEVSEPVKELICKQGYDPAYGARPLRRTVTEIVEDPLSEAFLAGSFK 910 The following BLAST results are available for this feature:
BLAST of CX044068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 160
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Sequences
The
following sequences are available for this feature:
EST sequence >CX044068 ID=CX044068; Name=CX044068; organism=Citrus sinensis; type=EST; length=840bpback to top |