CX044068

Overview
NameCX044068
Unique NameCX044068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.286e-58
Identity = 122/156 (78.21%), Postives = 125/156 (80.13%), Query Frame = -1
Query:  373 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAPESLADPLPV 840
            GRRI FDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF RLKTK+IELQ           EGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE             V VLNGSSG PESL + L +
Sbjct:  767 GRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEALSI 922          
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.907e-56
Identity = 120/157 (76.43%), Postives = 124/157 (78.98%), Query Frame = -1
Query:  373 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAPESLA-DPLPV 840
            GRRI FDLD DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF+RLK K+IELQ           EGYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE             VTVLNGSSG P   A +P+PV
Sbjct:  767 GRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV 923          
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.742e-54
Identity = 118/157 (75.16%), Postives = 123/157 (78.34%), Query Frame = -1
Query:  370 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAPESLADPLPVV 840
            GRRI FDLD+DEKDSSYNRIKSLVTEELKQYFRPEFLNRL EMIVFRQLTKLEVKEIADIMLKEVF RLK K+IELQ           EGYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE             VTVLNG+SGAP   A P P++
Sbjct:  770 GRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRLSEMIVFRQLTKLEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSA-PEPIL 925          
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.331e-51
Identity = 114/160 (71.25%), Postives = 122/160 (76.25%), Query Frame = -1
Query:  373 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNGSSGAP----ESLADPLPV 840
            GRRI FDLDY EKDSSYNRIKSLVT+ELKQYFRPEFLNRLDEMI+FRQLTKLEVKEIADI+L+E+F+RLK K++ELQ           EGYNPSYGARPLRRAIMRLLEDSM EKMLAREIKE             VTVLNG SG P    E   D LPV
Sbjct:  715 GRRIGFDLDY-EKDSSYNRIKSLVTQELKQYFRPEFLNRLDEMILFRQLTKLEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLPV 873          
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.063e-36
Identity = 82/142 (57.75%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  415 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXVTVLNG 840
            G  + F+L  D+ +S Y R++SLV EELKQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L            EGYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK              VTVL G
Sbjct:  673 GGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVDVTNEGEVTVLLG 814          
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.694e-36
Identity = 77/122 (63.11%), Postives = 96/122 (78.69%), Query Frame = -1
Query:  475 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 840
            G  + F+L  D+ +S Y R++SLV EELKQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L            EGYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK
Sbjct:  673 GGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIK 794          
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.519e-36
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = -1
Query:  472 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 840
            G  + FDL  D+ +S Y RIK+LV EELKQYFRPEFLNRLDE+IVFRQLTK EV EIA+IMLKEVF R+  K I+L+           EGYNP YGARPLRRA+MRLLED+++E+ LA +IKE
Sbjct:  670 GGGLGFDLSEDQTESQYGRIKALVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVGEIAEIMLKEVFTRISEKGIQLEVTARFKTHLINEGYNPIYGARPLRRAVMRLLEDTLSEEFLAEKIKE 792          
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.635e-33
Identity = 72/123 (58.54%), Postives = 98/123 (79.67%), Query Frame = -1
Query:  472 GRRICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 840
            G  + F+L+ + ++  Y+R+++LV EELKQYFRPEFLNR+DE+IVFRQLTK EV++IA IML+E+F+R+K + I LQ           EGYNPSYGARPLRRA++RLLEDS+AE++L+ +IKE
Sbjct:  703 GGGLGFELEENIEELQYSRMRNLVNEELKQYFRPEFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKE 825          
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24
Identity = 54/110 (49.09%), Postives = 81/110 (73.64%), Query Frame = -1
Query:  478 KDSS-YNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREI 804
            KDS+ + ++  LV EELK++FRPEFLNR+DE+IVF  LTK ++ EI  +M+K++  RL+ K++ L+           EGY+P YGARPLRRA+MRLLED++A++ L++ +
Sbjct:  715 KDSALFEKVTELVNEELKEFFRPEFLNRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVYGARPLRRAVMRLLEDTLAQQCLSKPL 824          
BLAST of CX044068 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.003e-23
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = -1
Query:  475 ICFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 831
            I F LD DE+ +SY  +K+LV EELK YFRPE LNR+DE+++FRQL K ++ EI ++ML+++  RL    + L+           +GY+P+YGARPLRR +  ++ED ++E  LA   K
Sbjct:  792 IGFILDDDEEAASYTGMKALVVEELKNYFRPELLNRIDEIVIFRQLEKAQMMEILNLMLQDLKSRLVALGVGLEVSEPVKELICKQGYDPAYGARPLRRTVTEIVEDPLSEAFLAGSFK 910          
The following BLAST results are available for this feature:
BLAST of CX044068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
CLPC_PEA7.286e-5878.21ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC8.907e-5676.43ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC3.742e-5475.16ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA1.331e-5171.25ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE2.063e-3657.75ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU2.694e-3663.11ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH3.519e-3664.23ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA1.635e-3358.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_ODOSI8.990e-2449.09ATP-dependent Clp protease ATP-binding subunit clp... [more]
ERD1_ARATH2.003e-2345.38ERD1 protein, chloroplastic OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_15B06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15B06-C11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044068 ID=CX044068; Name=CX044068; organism=Citrus sinensis; type=EST; length=840bp
ATAATATCTTATATAATTCACAGCAACTAAGAGCAGTCGATTATGATCCG
ACTTATCATTCAAATCCTTCTCTGATTAAGAAGAAAGCAAATAATGATGA
GAACTGAATAATAATAATAATAACAATATGAAACCTAACACTAGCAACTG
ACTGCAACTTTCCCACTATCTGCTGCTACTGAACTGAACCGTGTACTCTA
TTTTCATATGGTGTCACGAATACAGCCTTAAAACCCAACCACCACCGATT
TAATCAACAGCTTCCAAATCTACTGCCAAGTAGTCCTTCCAAGAAAACAG
ACTGAGTATCTAGCCAGTTGAAATCAAAATGGAAGTACAAACAACATCTC
AAAATAGATGATCAGTTTACACAACAGGTAGTGGATCTGCCAATGATTCT
GGAGCACCACTGCTGCCGTTGAGCACAGTCACGTTCCCATCAGAATCGAC
ATCAACGATGACCGAATCACCCTCTTTGATCTCTCTTGCAAGCATCTTCT
CAGCCATGCTGTCTTCCAAAAGTCTCATAATGGCTCTTCTCAATGGCCTT
GCTCCATAGCTTGGGTTATAACCTTCCTCAACCACCCTCTCCCTAAATCT
CTCTGTCACTTGAAGCTCAATATCTTTTGTCTTGAGTCTATCAAACACCT
CCTTCAGCATTATATCAGCGATCTCTTTAACCTCCAGCTTGGTGAGTTGT
CGGAAAACAATCATCTCATCCAATCTATTCAAGAACTCTGGCCTGAAGTA
CTGCTTCAATTCCTCAGTTACCAGACTCTTAATCCTGTTGTAACTGCTGT
CTTTCTCATCATAATCAAGATCAAAACAAATGCGGCGTCC
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