CX044067

Overview
NameCX044067
Unique NameCX044067
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.284e-77
Identity = 153/188 (81.38%), Postives = 156/188 (82.98%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPV 566
            GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF RLKTK+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE               VLNGSSG PESL + L +
Sbjct:  735 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGTPESLPEALSI 922          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 5.237e-75
Identity = 151/189 (79.89%), Postives = 155/189 (82.01%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLA-DPLPV 566
            GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLD DEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVF+RLK K+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE              TVLNGSSG P   A +P+PV
Sbjct:  735 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGTPSDPAPEPIPV 923          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.200e-73
Identity = 149/189 (78.84%), Postives = 154/189 (81.48%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAPESLADPLPVV 569
            GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLD+DEKDSSYNRIKSLVTEELKQYFRPEFLNRL EMIVFRQLTKLEVKEIADIMLKEVF RLK K+IELQ            GYNPSYGARPLRRAIMRLLEDSMAEKMLA EIKE              TVLNG+SGAP   A P P++
Sbjct:  738 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRLSEMIVFRQLTKLEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSA-PEPIL 925          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.974e-70
Identity = 144/192 (75.00%), Postives = 153/192 (79.69%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNGSSGAP----ESLADPLPV 566
            GRLT+SKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDY EKDSSYNRIKSLVT+ELKQYFRPEFLNRLDEMI+FRQLTKLEVKEIADI+L+E+F+RLK K++ELQ            GYNPSYGARPLRRAIMRLLEDSM EKMLAREIKE              TVLNG SG P    E   D LPV
Sbjct:  683 GRLTNSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDY-EKDSSYNRIKSLVTQELKQYFRPEFLNRLDEMILFRQLTKLEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTSLEEQEDSLPV 873          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.341e-54
Identity = 109/174 (62.64%), Postives = 131/174 (75.29%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEXXXXXXXXXXXXXXTVLNG 524
            GRLTD+KGRT+DFKNTLLIMTSN+GS VIEKGG  +GF+L  D+ +S Y R++SLV EELKQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L             GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK               TVL G
Sbjct:  641 GRLTDAKGRTIDFKNTLLIMTSNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVDVTNEGEVTVLLG 814          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.341e-54
Identity = 109/155 (70.32%), Postives = 125/155 (80.65%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467
            GRLTDSKGRTVDFKNTLLI+TSNVGS VIEKGG  +GFDL  D+ +S Y RIK+LV EELKQYFRPEFLNRLDE+IVFRQLTK EV EIA+IMLKEVF R+  K I+L+            GYNP YGARPLRRA+MRLLED+++E+ LA +IKE
Sbjct:  638 GRLTDSKGRTVDFKNTLLILTSNVGSKVIEKGGGGLGFDLSEDQTESQYGRIKALVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVGEIAEIMLKEVFTRISEKGIQLEVTARFKTHLINEGYNPIYGARPLRRAVMRLLEDTLSEEFLAEKIKE 792          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.751e-54
Identity = 105/154 (68.18%), Postives = 127/154 (82.47%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 464
            GRLTD+KGRT+DFKNTLLIMTSN+GS VIEKGG  +GF+L  D+ +S Y R++SLV EELKQYFRPEFLNRLDE+IVFRQLTK EV+EIA++ML EVF R+K +DI+L             GYNPSYGARPLRRA+MRLLEDS+AE++L+ +IK
Sbjct:  641 GRLTDAKGRTIDFKNTLLIMTSNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIK 794          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.038e-51
Identity = 100/155 (64.52%), Postives = 128/155 (82.58%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467
            GRLTDSKGRT+DFKNTLLIMTSN+GS VIEK G  +GF+L+ + ++  Y+R+++LV EELKQYFRPEFLNR+DE+IVFRQLTK EV++IA IML+E+F+R+K + I LQ            GYNPSYGARPLRRA++RLLEDS+AE++L+ +IKE
Sbjct:  671 GRLTDSKGRTIDFKNTLLIMTSNIGSKVIEKKGGGLGFELEENIEELQYSRMRNLVNEELKQYFRPEFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKE 825          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.174e-36
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR-RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIK 464
            G LTDS+GR V FKN L+IMTSNVGS  I KG    IGF LD DE+ +SY  +K+LV EELK YFRPE LNR+DE+++FRQL K ++ EI ++ML+++  RL    + L+            GY+P+YGARPLRR +  ++ED ++E  LA   K
Sbjct:  756 GHLTDSQGRRVSFKNALIIMTSNVGSLAIAKGRHGSIGFILDDDEEAASYTGMKALVVEELKNYFRPELLNRIDEIVIFRQLEKAQMMEILNLMLQDLKSRLVALGVGLEVSEPVKELICKQGYDPAYGARPLRRTVTEIVEDPLSEAFLAGSFK 910          
BLAST of CX044067 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.013e-34
Identity = 76/155 (49.03%), Postives = 109/155 (70.32%), Query Frame = 3
Query:    3 GRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKDIELQXXXXXXXXXXXXGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKE 467
            GRLTDSKGR VDF+NT++IMTSNVG+S +++  + +GF LD +EKD  Y  +KS V EELK+ FRPEFLNR+DE IVF  L K  +K+I  +M++++  RLK +D+ L             G++P YGARPLRR+I + +ED ++E++L   I++
Sbjct:  640 GRLTDSKGRVVDFRNTVIIMTSNVGASELKRN-KYVGFALDNEEKD--YKDMKSKVIEELKKAFRPEFLNRIDETIVFHSLEKEHMKDIVTLMVQQLQKRLKEQDLHLSLTDKAIEKIANEGFDPEYGARPLRRSIQKNIEDLLSEELLRGAIEK 791          
The following BLAST results are available for this feature:
BLAST of CX044067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
CLPC_PEA4.284e-7781.38ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC5.237e-7579.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC2.200e-7378.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA2.974e-7075.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE1.341e-5462.64ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH1.341e-5470.32ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU1.751e-5468.18ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA4.038e-5164.52ATP-dependent Clp protease ATP-binding subunit clp... [more]
ERD1_ARATH8.174e-3650.32ERD1 protein, chloroplastic OS=Arabidopsis thalian... [more]
CLPB_OCEIH2.013e-3449.03Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_15B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15B06-C11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044067 ID=CX044067; Name=CX044067; organism=Citrus sinensis; type=EST; length=863bp
ATGGAAGATTGACAGACAGCAAGGGAAGAACTGTAGACTTCAAGAATACT
CTTCTAATAATGACATCAAATGTTGGAAGCAGTGTAATTGAGAAGGGAGG
ACGCCGCATTGGTTTTGATCTTGATTATGATGAGAAAGACAGCAGTTACA
ACAGGATTAAGAGTCTGGTAACTGAGGAATTGAAGCAGTACTTCAGGCCA
GAGTTCTTGAATAGATTGGATGAGATGATTGTTTTCCGACAACTCACCAA
GCTGGAGGTTAAAGAGATCGCTGATATAATGCTGAAGGAGGTGTTTGATA
GACTCAAGACAAAAGATATTGAGCTTCAAGTGACAGAGAGATTTAGGGAG
AGGGTGGTTGAGGAAGGTTATAACCCAAGCTATGGAGCAAGGCCATTGAG
AAGAGCCATTATGAGACTTTTGGAAGACAGCATGGCTGAGAAGATGCTTG
CAAGAGAGATCAAAGAGGGTGATTCGGTCATCGTTGATGTCGATTCTGAT
GGGAACGTGACTGTGCTCAACGGCAGCAGTGGTGCTCCAGAATCATTGGC
AGATCCACTACCTGTTGTGTAAACTGATCATCTATTTTGAGATGTTGTTT
GTACTTCCATTTTGATTTCAACTGGCTAGATACTCAGTCTGTTTTCTTGG
AAGGACTACTTGGCAGTAGATTTGGAAGCTGTTGATTAAATCGGTGGTGG
TTGGGTTTTAAGGCTGTATTCGTGACACCATATGAAAATAGAGTACACGG
TTCAGTTCAGTAGCAGCAGATAGTGGGAAAGTTGCAGTCAGTTGCTAGTG
TTAGGTTTCATATTGTTATTATTATTATTATTCAGTTCTCATCATTATTT
GCTTTCTTCTTTA
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