DN134835

Overview
NameDN134835
Unique NameDN134835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134835_ssr192 microsatellite DN134835_ssr192:192..203. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7366 contig Csv1_Contig7366:471..1099. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN134835 vs. ExPASy Swiss-Prot
Match: YCXN_PORPU (Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra purpurea PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.073e-14
Identity = 44/148 (29.73%), Postives = 78/148 (52.70%), Query Frame = 1 
Query:   64 KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGPTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 507
            K Y Q+  G+P+ ++ + I MG +LL I+ L      +N + R    N   +++ YL+G    LA S CSTP+  TLL +V ++ +  IG   +L Y+ GY+ P+++ + F+    +  S    ++   P SG +LL  G ++    +
Sbjct:   96 KTYSQLFNGIPVISALVIIYMGFSLLNIVPLST----NNLNTRINNTN--QNIKMYLSGVGIGLAISSCSTPIFVTLLIWVTSNHNLFIGLIFILIYSIGYIFPIIIGSLFSSRFLTTASSPFLNNLWAPFSGTILLSAGTFSLFSSI 237
[Close]
BLAST of DN134835 vs. ExPASy Swiss-Prot
Match: YCXN_PORYE (Putative cytochrome c-type biogenesis protein dbsD-like OS=Porphyra yezoensis PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 36/118 (30.51%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:   64 KAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGPTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSL 417
            K Y Q   G+P  ++ + I MGLNLL I+ +  P F           N   + + YL+G    +A S CSTP+  TLL ++ +++    G   +L Y+ GY+ P+++ + F+ +   L
Sbjct:   96 KTYSQFFNGIPTISAVVIIYMGLNLLNIVHINSPKF------NGLVTNNNYNFKMYLSGVGIGIAISSCSTPIFVTLLVWINSTQKIFTGLIFILIYSIGYIFPIIIGSIFSTSFLKL 207
The following BLAST results are available for this feature:
BLAST of DN134835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YCXN_PORPU5.073e-1429.73Putative cytochrome c-type biogenesis protein dbsD... [more]
YCXN_PORYE3.078e-1130.51Putative cytochrome c-type biogenesis protein dbsD... [more]
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Properties
Property NameValue
Genbank descriptionwca01h11 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01h11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134835 ID=DN134835; Name=DN134835; organism=Citrus sinensis; type=EST; length=629bp
GGCCGGGTCTTAGGATTGGCTACAACCCTTGCACTCTTAGGTGTAGGAGC
CTCCTTTGCAGGAAAGGCATATGGTCAAATAGGCACTGGTTTACCTTTGG
CAGCCTCTGGTTTGGCTATTGTTATGGGTCTAAATCTACTCGAGATAATC
GAATTACAACTCCCCTCATTTTTTGACAACTTTGACCCACGTGCTGCTGC
TGCAAACTTCCCATCGAGTGTACAAGCATATCTAGCTGGGCCTACGTTTG
CGTTAGCTGCATCACCTTGCAGTACGCCTGTGCTGGCCACTTTACTTGGA
TATGTAGCTACATCCAAGGATCCTCTAATAGGTGGCACTTTACTTTTGTC
ATACACTACTGGCTATGTTGCCCCTCTACTTCTTGCTGCTTCTTTTGCTG
GAGCATTGCAGAGTCTGCTTTCTTTTCGCAAGTTCTCCTCATGGATAAAT
CCAATGAGTGGTGCACTTCTCCTGGGAGGTGGTCTGTACACTTTCTTGGA
TAGGCTTTTCCCCACCACAATGGCAATGTAAAAATCATTCACTGTATTAT
TTGCCAAAAGGTATTGTACAGCAAACAAGAAATAAAACAATATTCTCCCC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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