CX044064

Overview
NameCX044064
Unique NameCX044064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044064 vs. ExPASy Swiss-Prot
Match: FB84_ARATH (F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 5.168e-93
Identity = 174/276 (63.04%), Postives = 207/276 (75.00%), Query Frame = 3
Query:    6 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTXXXXXXXXXXXXXFSCSRSIKS----TEGHDFASLPFDVLNKIAASFTLPQLRVASLVCKSWNDALRPLREAMVLVRWGKRFKHGRG-VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPSNAEEAVKWLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 818
            MKQRTWP RS GSRF++L F      ++R  ++              S S S  S     E  DF+ LP+D+L KIAA F+ P L+ ASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE  +KE A++LYR+A+ LGD  GQ NLGI+YLQ QPSN +EA+KWL Q++  G+VRAQYQLALCLH GR V  NL EA +WYL+AAEGGYVRAMYN SLCYS GEGLP + + ARKWMKRAAD
Sbjct:    1 MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSNEFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRGGVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNLGIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAEGGYVRAMYNISLCYSVGEGLPQNRKLARKWMKRAAD 276          
BLAST of CX044064 vs. ExPASy Swiss-Prot
Match: SE1L1_RAT (Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.327e-15
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  345 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PSNAEEAVKWLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 818
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K+  +A+  G V  Q QL    + G GV  + ++A +++  A++GG++ A YN +  ++ G G+  S   A +  K   +
Sbjct:  387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCE 551          
BLAST of CX044064 vs. ExPASy Swiss-Prot
Match: SE1L1_MOUSE (Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.327e-15
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  345 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PSNAEEAVKWLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 818
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K+  +A+  G V  Q QL    + G GV  + ++A +++  A++GG++ A YN +  ++ G G+  S   A +  K   +
Sbjct:  383 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCE 547          
BLAST of CX044064 vs. ExPASy Swiss-Prot
Match: SE1L1_MESAU (Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.327e-15
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  345 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PSNAEEAVKWLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 818
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K+  +A+  G V  Q QL    + G GV  + ++A +++  A++GG++ A YN +  ++ G G+  S   A +  K   +
Sbjct:  387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCE 551          
BLAST of CX044064 vs. ExPASy Swiss-Prot
Match: SE1L1_HUMAN (Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 4.327e-15
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 3
Query:  345 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PSNAEEAVKWLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAAD 818
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K+  +A+  G V  Q QL    + G GV  + ++A +++  A++GG++ A YN +  ++ G G+  S   A +  K   +
Sbjct:  387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCE 551          
BLAST of CX044064 vs. ExPASy Swiss-Prot
Match: YBEQ_ECOLI (Uncharacterized protein ybeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.021e-13
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 3
Query:  348 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD--KKEAAISL--YRQAAVLGDPAGQFNLGISYLQAQ--PSNAEEAVKWLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQARKWMKRAADC 821
            RG   N  +A+  +   A  G + A  + G MY   +   K+ A++   Y+QAA+ G    Q NL   Y   +    N   A  W  +++  G+  AQ+Q+A   + G GVD + ++A  WYL+AA  G V A  N    Y  G+G+   ++ A +W  +AA+C
Sbjct:  110 RGEAPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKAAAQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAEC 273          
BLAST of CX044064 vs. ExPASy Swiss-Prot
Match: SE1L2_MOUSE (Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 49/155 (31.61%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  348 RGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMD-----KKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PSNAEEAVKWLYQASIAGHVRAQYQLALCLHRGRGVDFNLQEAARWYLRAAEGGYVRAMYNTSLCYSFGEGLPLSHRQA 791
            +G+ ++  KAL  FLK A  GS  AM   G MY+E +         A   +  AA  G+  G   LG+ Y   +  P N  EA+K+  +A+  G   AQ+QL    + G GV  + + A +++  A++ G   A+Y  +  Y+ G G+  S R A
Sbjct:  312 KGLDQDYSKALYYFLKAAKAGSANAMAFIGKMYFEGNAAAPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPVNYGEALKYFQKAAEKGWPNAQFQLGFMYYSGSGVWKDYKLAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTA 466          
The following BLAST results are available for this feature:
BLAST of CX044064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FB84_ARATH5.168e-9363.04F-box protein At1g70590 OS=Arabidopsis thaliana GN... [more]
SE1L1_RAT4.327e-1531.52Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Se... [more]
SE1L1_MOUSE4.327e-1531.52Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l P... [more]
SE1L1_MESAU4.327e-1531.52Protein sel-1 homolog 1 OS=Mesocricetus auratus GN... [more]
SE1L1_HUMAN4.327e-1531.52Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L P... [more]
YBEQ_ECOLI9.021e-1331.10Uncharacterized protein ybeQ OS=Escherichia coli (... [more]
SE1L2_MOUSE6.465e-1131.61Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_15B04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15B04-C7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044064 ID=CX044064; Name=CX044064; organism=Citrus sinensis; type=EST; length=823bp
GGAAGATGAAGCAAAGAACATGGCCGGATCGATCGACCGGCTCTCGGTTC
ACAGCTCTTCAATTTCCGATAACCGAGAAGGATAACCGCCGACCAGAACT
CACTGCCAGTGCACGGAAGGCTAGAATCAAACGGCGCAGCCGCTTCAGCT
GCTCACGATCAATAAAATCAACGGAGGGTCATGATTTCGCGAGCCTACCG
TTCGATGTCTTGAACAAAATCGCAGCGTCATTCACGCTGCCTCAACTGAG
AGTGGCGTCGCTGGTGTGCAAGTCATGGAACGACGCGCTTCGGCCGTTGA
GAGAGGCGATGGTGTTAGTAAGATGGGGGAAACGATTCAAGCACGGCCGA
GGCGTCCGCAAGAACTTGGATAAGGCTCTCGACTCGTTCTTGAAAGGCGC
GGCGCGCGGCTCCACGCTTGCTATGGTTGACGCCGGACTGATGTATTGGG
AGATGGACAAAAAGGAGGCGGCTATTAGCTTGTATCGGCAAGCCGCTGTG
CTTGGAGATCCAGCTGGTCAGTTCAATTTGGGAATTTCTTATTTGCAAGC
GCAACCTTCAAATGCAGAGGAAGCTGTGAAGTGGTTGTATCAAGCATCGA
TTGCTGGCCATGTTCGAGCTCAGTATCAACTTGCACTTTGCCTGCATAGA
GGTAGAGGAGTGGATTTCAATCTTCAAGAGGCTGCTAGGTGGTATTTAAG
AGCTGCTGAAGGTGGCTATGTGCGTGCTATGTACAACACCTCTCTTTGCT
ATTCCTTTGGGGAAGGTTTGCCACTGAGTCACAGACAAGCGAGGAAATGG
ATGAAAAGAGCAGCTGATTGTGG
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