DN134830

Overview
NameDN134830
Unique NameDN134830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13291 contig Csv1_Contig13291:83..725. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DN134830 vs. ExPASy Swiss-Prot
Match: Y8111_DICDI (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.699e-16
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  164 QKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 454
            Q+ QE  ++EA+ERRQ +L QIL+ +ARE  +RI +VKPEK+R +ED+I+R+AQ GQ+ E+V + +LISLLE                +R  +EDDD
Sbjct:   24 QQRQEAQRQEANERRQGILIQILTPDARERLSRITIVKPEKSRQIEDLIIRAAQTGQLTERVDDAKLISLLE---QLSEKTKKTTITMKRRTIEDDD 117          
BLAST of DN134830 vs. ExPASy Swiss-Prot
Match: PDCD5_PONAB (Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.705e-13
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  131 AXXSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 454
            A    ++ +    AQ++AK    E R  +L+Q+L   AR   + +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+               RR+ +  D+D
Sbjct:   15 AELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          

HSP 2 Score: 28.1054 bits (61), Expect = 3.705e-13
Identity = 12/20 (60.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:   66 MADPELEAIRQRRMQELMAQ 125
            MAD ELEA+R++R+ EL A+
Sbjct:    1 MADEELEALRRQRLAELQAK 20          
BLAST of DN134830 vs. ExPASy Swiss-Prot
Match: PDCD5_HUMAN (Programmed cell death protein 5 OS=Homo sapiens GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.705e-13
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  131 AXXSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 454
            A    ++ +    AQ++AK    E R  +L+Q+L   AR   + +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+               RR+ +  D+D
Sbjct:   15 AELQAKHGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122          

HSP 2 Score: 28.1054 bits (61), Expect = 3.705e-13
Identity = 12/20 (60.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:   66 MADPELEAIRQRRMQELMAQ 125
            MAD ELEA+R++R+ EL A+
Sbjct:    1 MADEELEALRRQRLAELQAK 20          
BLAST of DN134830 vs. ExPASy Swiss-Prot
Match: PDCD5_MOUSE (Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 6.254e-13
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  131 AXXSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 454
            A    ++ +    AQ++AK+   E R  +L+Q+L   AR   + +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE               RR+ +  D+D
Sbjct:   15 AELQAKHGDPGDAAQQEAKQREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122          

HSP 2 Score: 28.1054 bits (61), Expect = 6.254e-13
Identity = 12/20 (60.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:   66 MADPELEAIRQRRMQELMAQ 125
            MAD ELEA+R++R+ EL A+
Sbjct:    1 MADEELEALRKQRLAELQAK 20          
BLAST of DN134830 vs. ExPASy Swiss-Prot
Match: YF69_SCHPO (Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe GN=SPAC23C4.09c PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.520e-11
Identity = 43/115 (37.39%), Postives = 60/115 (52.17%), Query Frame = 2
Query:  116 HG--PTXAXXSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEXXXXXXXXXXXXXXXRRRSVLEDDD 454
            HG  P+       +++Q Q+ Q       DE RQ +LSQIL   AR+   RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LLE                 R V +D+D
Sbjct:   20 HGSAPSNIASGPSSNQQQQEVQ-------DEMRQNLLSQILEHPARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNETKIVINRRVQDDED 127          
BLAST of DN134830 vs. ExPASy Swiss-Prot
Match: Y1619_METKA (DNA-binding protein MK1619 OS=Methanopyrus kandleri GN=MK1619 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.262e-11
Identity = 31/76 (40.79%), Postives = 54/76 (71.05%), Query Frame = 2
Query:  158 QHQKAQEDAKREADE--RRQMMLSQILSTEARESFARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 379
            Q +K +E+ +++A E  +R+ ML +IL+ EARE  AR+ L +P+ A+ VE+ +L+ AQ GQ+ EK+ E++L  +L+
Sbjct:   25 QEKKVEEEREKKALEEAQRRAMLRRILTPEARERLARVRLARPQLAQAVENYLLQLAQTGQLKEKIDEDQLKRILK 100          

HSP 2 Score: 26.5646 bits (57), Expect = 9.262e-11
Identity = 11/29 (37.93%), Postives = 17/29 (58.62%), Query Frame = 3
Query:   66 MADPELEAIRQRRMQELMAQXXRXXVNKI 152
            M DPELE IR++++ EL  +       K+
Sbjct:    1 MTDPELERIRRKKIMELQRKLEESQEKKV 29          
The following BLAST results are available for this feature:
BLAST of DN134830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y8111_DICDI5.699e-1646.39DNA-binding protein DDB_G0278111 OS=Dictyostelium ... [more]
PDCD5_PONAB3.705e-1333.33Programmed cell death protein 5 OS=Pongo abelii GN... [more]
PDCD5_HUMAN3.705e-1333.33Programmed cell death protein 5 OS=Homo sapiens GN... [more]
PDCD5_MOUSE6.254e-1333.33Programmed cell death protein 5 OS=Mus musculus GN... [more]
YF69_SCHPO5.520e-1137.39Uncharacterized protein C23C4.09c OS=Schizosacchar... [more]
Y1619_METKA9.262e-1140.79DNA-binding protein MK1619 OS=Methanopyrus kandler... [more]
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Properties
Property NameValue
Genbank descriptionwca01h06 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01h06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134830 ID=DN134830; Name=DN134830; organism=Citrus sinensis; type=EST; length=645bp
AGGGGAAGGAAGCAGAAACAGAGTTCAGAGTAGGCAGCGTTTGCTCATCG
ATCCATTCAAATCAAATGGCTGACCCTGAACTAGAAGCAATTAGACAAAG
AAGAATGCAAGAGCTCATGGCCCAACANNNGCGTGNNNGAGTCAACAAAA
TTCTGAGCAGCATCAGAAAGCTCAGGAAGATGCCAAGAGGGAGGCAGATG
AACGGAGACAAATGATGCTTAGCCAGATTTTGTCAACCGAAGCACGTGAA
AGTTTTGCTCGAATTGCTTTGGTGAAACCCGAGAAGGCTAGAGGTGTTGA
GGACATTATATTGAGATCTGCCCAAATGGGTCAGATAGTTGAGAAGGTTT
CTGAAGAGAGGCTCATATCATTGCTGGAACAGATTAACACCCAAACCACC
AAACAGACCAAAGTCACAATCCAAAGGCGCCGGAGTGTTTTGGAAGATGA
TGATTAACCTTGTGTAATTTCTGGTCATCATGGTGTGATACGCAATGCTA
TTCATGGTTATTGAAATTATGATGTGCTTTTTCATTGTTATTGACGGTTC
ACCGTTTTGACATTATCTACAGGGTTTGTGTTATTTATACTCAAATCTTT
TCTATAGTTATGTATCGGTTNNNNNNCTAGTAATTAACTTCTAAA
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