CX044052

Overview
NameCX044052
Unique NameCX044052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044052 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 6.182e-47
Identity = 100/161 (62.11%), Postives = 117/161 (72.67%), Query Frame = -3
Query:  179 SYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKXXXXXXXXXXXXLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQLR----PSWEGSEQQLGYNPQHTQTQGLFQPIECNPTLQIGY-NPSCSDQMTAT--SHAQQVSGFIPGWML 640
            SYREYLKLK R+E+LQR QRNLLGEDLGPLNSK            LK VRS KTQYMLDQLSDLQNKEQ+LL+TNRAL +KLD++             WEG EQ + Y     Q+QGL+QP+ECNPTLQ+GY NP CS+Q+TAT  + AQQ +G+IPGWML
Sbjct:   91 SYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGGEQNVTYAHHQAQSQGLYQPLECNPTLQMGYDNPVCSEQITATTQAQAQQGNGYIPGWML 251          
BLAST of CX044052 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.881e-41
Identity = 91/160 (56.88%), Postives = 111/160 (69.38%), Query Frame = -3
Query:  179 SYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKXXXXXXXXXXXXLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINA--KTQLRPSWEGSEQQ-LGYNPQHTQTQGLFQPIECNPTLQIGY-NPSCSDQMTAT--SHAQQVSGFIPGWML 640
            SYREYLKLK R+E+LQR QRNLLGEDLGPLNSK            LK VR  KTQYMLDQLSDLQ KE +LLD NRAL++KL+++       +   WEG +QQ + Y      +QGL+Q +EC+PTLQIGY +P CS+QM  T    +QQ +G+IPGWML
Sbjct:   91 SYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGGGWEGGDQQNIAYGHPQAHSQGLYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWML 250          
BLAST of CX044052 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.301e-32
Identity = 77/155 (49.68%), Postives = 96/155 (61.94%), Query Frame = -3
Query:  182 SYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKXXXXXXXXXXXXLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQLRPSWEGSEQQLGYNPQHTQTQ--GLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWM 640
            S +EYLKLK R+E+LQR+QRNLLGEDLGPLNSK            LK +RST+TQ MLDQL DLQ KE  L + NR L  +L E    + L   W+ + Q +GY  Q TQTQ  G F P+EC PTLQIGY    +D +T       V+ ++ GW+
Sbjct:   92 SQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLME---GSTLNLQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ---NDPITVGGAGPSVNNYMAGWL 240          
BLAST of CX044052 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.641e-31
Identity = 77/156 (49.36%), Postives = 99/156 (63.46%), Query Frame = -3
Query:  179 SYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKXXXXXXXXXXXXLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQLRPSWEGSEQQLGYNPQHTQTQGLFQ--PIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWML 640
            SY+EYLKLK + + LQR+ RNLLGEDLG L++K            L+ +RS KTQ+MLDQL+DLQ KE++L ++NRAL  KL+E  A    RP+W+   +Q G         G F+  P+ CN  LQIGYN +  DQM AT+ AQ V GF  GWML
Sbjct:   90 SYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEESCA--SFRPNWD--VRQPG--------DGFFEPLPLPCNNNLQIGYNEATQDQMNATTSAQNVHGFAQGWML 233          
BLAST of CX044052 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.592e-29
Identity = 71/156 (45.51%), Postives = 97/156 (62.18%), Query Frame = -3
Query:  182 SYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKXXXXXXXXXXXXLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQLRPSWEGSEQQLGYNPQHTQTQG--LFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFI-PGWM 640
            S +EYLKLK R E+LQR+QRNLLGEDLGPL SK            L+ +RST+TQ+MLDQL+DLQ +EQ+L + N+ L  + +E +   Q +     +   +GY  Q  Q  G   + P+EC PTLQIGY+   SD   AT+ A  V+ ++ PGW+
Sbjct:   90 SQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYH---SDITMATATASTVNNYMPPGWL 242          
BLAST of CX044052 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.096e-27
Identity = 68/155 (43.87%), Postives = 96/155 (61.94%), Query Frame = -3
Query:  182 SYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKXXXXXXXXXXXXLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL-DEINAKTQLRPSWEGSEQQLGYNPQHTQ-TQGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWM 640
            S +EYLKLK R+++LQRTQRNLLGEDLGPL++K            LK +R+ +TQ+MLDQL+DLQ+KE++L +TN+ L ++L D      QL P+ E  +    ++ Q  Q +Q  FQP+EC P LQIGY      Q         V+ ++ GW+
Sbjct:   94 SQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQMPLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGY----QGQQDGMGAGPSVNNYMLGWL 244          
BLAST of CX044052 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.432e-27
Identity = 76/160 (47.50%), Postives = 100/160 (62.50%), Query Frame = -3
Query:  182 SYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKXXXXXXXXXXXXLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLD--EINAKTQLRPSWEGSEQQLGY---NPQHTQTQGLF--QPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWM 640
            S +EYLKLK R+ESLQR+QRNL+GEDLGPL+SK            LK +RST+TQ+MLDQL DLQ KE LL + NRAL  +++  +IN+  QL  S E     +GY   +  HT    LF  QPIEC PTLQIGY+    D  +  +    ++ ++ GW+
Sbjct:   94 SQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINS-LQLNLSAE----DMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQ--GDPGSVVTAGPSMNNYMGGWL 246          
BLAST of CX044052 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.700e-26
Identity = 67/157 (42.68%), Postives = 93/157 (59.24%), Query Frame = -3
Query:  182 SYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKXXXXXXXXXXXXLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL-DEINAKTQLRPSWEGSEQQLGYNPQHTQT---QGLFQPIECNPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWM 640
            S +EYLKLK R+++LQRTQRNLLGEDLGPL++K            LK +R+ +TQ+MLDQL+DLQ+KE++L +TN+ L ++L D      QL P+ E      G + Q  Q       FQP+EC P LQ+GY       M A       + ++ GW+
Sbjct:   94 SQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQMPLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHGMEA---GPSENNYMLGWL 247          
BLAST of CX044052 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.935e-24
Identity = 75/165 (45.45%), Postives = 93/165 (56.36%), Query Frame = -3
Query:  182 SYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKXXXXXXXXXXXXLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQLRPS-WEGSEQQLGYNPQ--HTQTQ-------GLFQPIE--CNPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWM 640
            S  EYLKLK R E+LQRTQRNLLGEDLG L  K            L+H+RST+TQ+MLDQL+DLQ +EQ+L + N+ L  KL+E N   QL    WE     LGY  Q  H   Q       G F  +E    PTLQIG+ P   +QM  +     V+ F+P W+
Sbjct:   93 SRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESN---QLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTP---EQMNNSC----VTAFMPTWL 247          
BLAST of CX044052 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.270e-22
Identity = 65/161 (40.37%), Postives = 90/161 (55.90%), Query Frame = -3
Query:  182 SYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKXXXXXXXXXXXXLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAKTQLRPSWEGSEQQLGYNPQHTQTQ------GLFQPIEC--NPTLQIGYNPSCSDQMTATSHAQQVSGFIPGWM 640
            S  EYLKLK R E+LQRTQRNLLGEDL  L  K            LKHVR+T+T++++DQL++LQ KEQ++ + NR L  KL+E N   + +  WE     +GY  Q    Q      G F P++    PTLQIGY     + M +      ++ ++P W+
Sbjct:   93 SRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESN-HVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGYPAEHHEAMNSAC----MNTYMPPWL 248          
The following BLAST results are available for this feature:
BLAST of CX044052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SEP1_ARATH6.182e-4762.11Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
SEP2_ARATH3.881e-4156.88Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
AGL9_PETHY4.301e-3249.68Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
CMB1_DIACA3.641e-3149.36MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
AGL9_ARADE7.592e-2945.51Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
SEP3_ARATH1.096e-2743.87Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MTF1_PEA1.432e-2747.50MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_SINAL2.700e-2642.68Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MADS8_ORYSJ1.935e-2445.45MADS-box transcription factor 8 OS=Oryza sativa su... [more]
MADS7_ORYSJ5.270e-2240.37MADS-box transcription factor 7 OS=Oryza sativa su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_15A10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15A10-A19-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044052 ID=CX044052; Name=CX044052; organism=Citrus sinensis; type=EST; length=642bp
CTCTAGCATGCTCAAGACCCTTGAAAGGTCCCAGCATCCTCCACAATTGA
TCAGTCACTGCTGCCATTTATGTTAATATGGGCTTACACATATGCTCTTG
AAATCATTTACATATTTCCAAACATCAAGAAGCATCAATTTCACCCCGCT
GCCACCTGCCGATTCCACAAAACTCTCACAGCATCCATCCTGGGATGAAA
CCACTCACTTGCTGAGCATGACTTGTTGCAGTCATCTGGTCTGAACACGA
AGGATTATACCCAATTTGCAAAGTAGGATTGCATTCAATAGGCTGGAATA
GTCCTTGAGTTTGAGTATGCTGAGGATTATAACCTAGTTGCTGCTCACTG
CCTTCCCAAGAAGGTCGAAGCTGAGTCTTTGCATTGATTTCATCCAACTT
TATTGTCAAAGCTCTGTTAGTATCTAGTAACAATTGTTCCTTGTTTTGAA
GATCAGAAAGCTGATCAAGCATATACTGTGTCTTGGTGGAGCGAACATGC
TTCAAGGATGACTCTAGCTGACGCTCAAGCTGCTCCAGTTCCTTTGAGTT
GAGAGGTCCCAAATCCTCTCCAAGAAGATTCCTCTGAGTTCGCTGCAAGG
ACTCAAATCTTGTTTTCAGTTTCAAGTACTCCCGGTAGCTGC
back to top