DN134821

Overview
NameDN134821
Unique NameDN134821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length280
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in Vulnus5 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN134821_ssr5 microsatellite DN134821_ssr5:5..19. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:125..404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN134821 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.995e-24
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 2
Query:   83 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETXGNCKCGPTCACVNCTCG 280
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE  G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of DN134821 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.327e-19
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   83 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETXGNCKCGPTCACVNCTC 277
            MSD CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of DN134821 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.681e-19
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 2
Query:   92 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETXGNCKCGPTCACVNCTCG 280
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE  G CKCG  CAC +C CG
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCG 64          
BLAST of DN134821 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.312e-17
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 2
Query:   83 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETXGNCKCGPTCACVNCTC 277
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of DN134821 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 2
Query:   83 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETXGNCKCGPTCACVNCTCG 280
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE  G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of DN134821 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.873e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 2
Query:   83 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETXGNCKCGPTCACVNCTCG 280
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN134821 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.873e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 2
Query:   83 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETXGNCKCGPTCACVNCTCG 280
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of DN134821 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.377e-14
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 2
Query:   83 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETXGNCKCGPTCACVNCTCG 280
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E  G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of DN134821 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.563e-13
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 2
Query:   83 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETXGNCKCGPTCACVNCTCG 280
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E  G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of DN134821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA9.995e-2469.70Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE3.327e-1967.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC9.681e-1961.90Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV5.312e-1758.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO2.636e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ5.873e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI5.873e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ9.377e-1450.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI3.563e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionwca01g03 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01g03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN134821 ID=DN134821; Name=DN134821; organism=Citrus sinensis; type=EST; length=280bp
TCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCCA
GTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGC
AACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTA
TGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTG
TCATGGACGTTCAGGCTGCTGAGACTGNNGGTAACTGCAAGTGCGGCCCC
ACCTGCGCTTGTGTGAACTGCACTTGTGGT
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