DN134818 | Citrus Genome Database

Overview


Name	DN134818
Unique Name	DN134818
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	707

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in Vulnus5 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig762	contig	Csv1_Contig762:88..793.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DN134818 vs. ExPASy Swiss-Prot
Match: CALM_MEDSA (Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.698e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 2

Query:    8 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of DN134818 vs. ExPASy Swiss-Prot
Match: CALM_LILLO (Calmodulin OS=Lilium longiflorum PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.698e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 2

Query:    8 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 2

Query:  200 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DN134818 vs. ExPASy Swiss-Prot
Match: CALM_HELAN (Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3)

HSP 1 Score: 282.337 bits (721), Expect = 1.698e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 2

Query:    8 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of DN134818 vs. ExPASy Swiss-Prot
Match: CALM_EUPCH (Calmodulin OS=Euphorbia characias PE=2 SV=4)

HSP 1 Score: 282.337 bits (721), Expect = 1.698e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 2

Query:    8 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 2

Query:  200 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DN134818 vs. ExPASy Swiss-Prot
Match: CALM_BRYDI (Calmodulin OS=Bryonia dioica PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.698e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 2

Query:    8 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 2

Query:  200 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DN134818 vs. ExPASy Swiss-Prot
Match: CALM7_ARATH (Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.698e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 2

Query:    8 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 2

Query:  200 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DN134818 vs. ExPASy Swiss-Prot
Match: CALM1_PETHY (Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.698e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 2

Query:    8 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 2

Query:  200 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DN134818 vs. ExPASy Swiss-Prot
Match: CALM1_DAUCA (Calmodulin-1/11/16 OS=Daucus carota GN=CAM-1 PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.698e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 2

Query:    8 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    9 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 2

Query:  200 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

[Close]

BLAST of DN134818 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.784e-75
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 2

Query:    8 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            QI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    9 QIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of DN134818 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.784e-75
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 2

Query:    8 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            QI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Sbjct:    9 QIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

HSP 2 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 2

Query:  200 MARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 430
            MA ++ D D   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTD-DQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARK 76

The following BLAST results are available for this feature:

BLAST of DN134818 vs. ExPASy Swiss-Prot

BLAST of DN134818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477


Match Name	E-value	Identity	Description
CALM_MEDSA	1.698e-75	100.00	Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2	[more]
CALM_LILLO	1.698e-75	100.00	Calmodulin OS=Lilium longiflorum PE=2 SV=2	[more]
CALM_HELAN	1.698e-75	100.00	Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3	[more]
CALM_EUPCH	1.698e-75	100.00	Calmodulin OS=Euphorbia characias PE=2 SV=4	[more]
CALM_BRYDI	1.698e-75	100.00	Calmodulin OS=Bryonia dioica PE=2 SV=2	[more]
CALM7_ARATH	1.698e-75	100.00	Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 ...	[more]
CALM1_PETHY	1.698e-75	100.00	Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2	[more]
CALM1_DAUCA	1.698e-75	100.00	Calmodulin-1/11/16 OS=Daucus carota GN=CAM-1 PE=2 ...	[more]
CALM_SPIOL	3.784e-75	99.29	Calmodulin OS=Spinacia oleracea PE=1 SV=2	[more]
CALM_HORVU	3.784e-75	99.29	Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	wca01f12 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01f12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN134818 ID=DN134818; Name=DN134818; organism=Citrus sinensis; type=EST; length=707bp
GGCCGGGCAGATCTCCGAGTTTAAAGAAGCCTTCAGCTTGTTCGACAAGG
ACGGCGACGGTTGCATTACCACCAAGGAGCTTGGCACTGTTATGAGGTCA
CTGGGTCAGAACCCCACTGAGGCTGAGCTCCAGGACATGATCAATGAAGT
GGATGCTGATGGTAATGGAACTATTGATTTTCCTGAATTCCTAAACCTCA
TGGCCAGGAAGATGAAGGATACCGACTCTGAGGAGGAGCTGAAAGAGGCC
TTCCGGGTTTTCGACAAGGATCAGAATGGTTTCATCTCAGCTGCTGAACT
GCGTCATGTGATGACAAACCTTGGGGAGAAGCTTACTGATGAGGAAGTCG
ATGAGATGATAAGGGAAGCTGATGTCGATGGTGATGGCCAGATAAATTAT
GAGGAATTTGTCAAGGTTATGATGGCTAAGTAAGTGACTCCACCCAACCA
AAACTTCCTGGAAAAAGAAGAAATTGGCTGATTAATATAATTGGTTCCCT
AGTTTCCTTTTTTATAAATTTTAATTTGATAACTCTGAGGTCAAGCTAAA
GGAAGCATGTTGTCTCCTGCTTCAATTTGTCTTGTGACTGGAGCAACTTT
TCAGTTTTTTAATGTTTTAGTTTTTTTCCGCTCTTCTGTGAACATTGTTT
CTGTTAAATGAGTGACTCGTTGATCTGCCGGAAAAAAAAAAAAAANNNAA
AAAAAAA