CX044035

Overview
NameCX044035
Unique NameCX044035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044035 vs. ExPASy Swiss-Prot
Match: ODPA_PORYE (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.636e-35
Identity = 72/142 (50.70%), Postives = 96/142 (67.61%), Query Frame = -1
Query:  416 GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIXXXXXXXXXXXXXXAPPPRSQLLENVFAD 841
            GM+H R++S P+I+KK  AFG+PG  VDGMDVL VR+ AK+A++RAR+G+GPTL+E  TYRFRGHSLADPDELR   EK  + ARDPI  LKKY++++ +A+  EL  I+  +                P  S+L   +FAD
Sbjct:  204 GMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQAAKQAVQRARQGDGPTLIEALTYRFRGHSLADPDELRSRQEKEAWVARDPIKKLKKYILDNEIANIGELNEIQNAVKTELEQAVKFAISSPEPNMSELKRYLFAD 345          
BLAST of CX044035 vs. ExPASy Swiss-Prot
Match: ODPA_PORPU (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra purpurea GN=pdhA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.667e-35
Identity = 73/142 (51.41%), Postives = 97/142 (68.31%), Query Frame = -1
Query:  416 GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIXXXXXXXXXXXXXXAPPPRSQLLENVFAD 841
            GM+H R++S P+I+KK  AFG+PG  VDGMDVL VR+VA++A+ERAR+G+GPTL+E  TYRFRGHSLADPDELR   EK  + ARDPI  LKK+++++ +AS  EL  I+  +                P  S+L   +FAD
Sbjct:  202 GMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQVAEKAVERARQGQGPTLIEALTYRFRGHSLADPDELRSRQEKEAWVARDPIKKLKKHILDNQIASSDELNDIQSSVKIDLEQSVEFAMSSPEPNISELKRYLFAD 343          
BLAST of CX044035 vs. ExPASy Swiss-Prot
Match: ODPA_RICBR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.123e-21
Identity = 48/113 (42.48%), Postives = 74/113 (65.49%), Query Frame = -1
Query:  503 GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 841
            G S  R+T    +YKKG +FG+ GF ++GMD  ++ +  K+A E  R    P ++E +TYR+RGHS++DP + R   E   Y  RDPIT ++K ++E++ ASEA+LK IE+ +
Sbjct:  186 GTSVARSTFMRDLYKKGESFGIKGFQLNGMDFEEMYDGVKQAAEYVRENSMPLILEVKTYRYRGHSMSDPAKYRSKEEVETYKERDPITEIRKIILENNYASEADLKEIEQSV 298          
BLAST of CX044035 vs. ExPASy Swiss-Prot
Match: ODPA_RICFE (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis GN=pdhA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = -1
Query:  503 GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 841
            G S  R+T    +YKKG +FG+ GF +DGMD  ++   AK+A E  R    P ++E +TYR+RGHS++DP + R   E  +Y  RDP+  ++K ++++  A+EA+LK IE+ +
Sbjct:  186 GTSVARSTFMRDLYKKGESFGIKGFQLDGMDFEEMYNGAKQAAEYVRENSFPLILEVKTYRYRGHSMSDPAKYRSKEEVEQYKERDPLVIIRKTILDNKYATEADLKEIEQSV 298          
BLAST of CX044035 vs. ExPASy Swiss-Prot
Match: ODPA_RICCN (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii GN=pdhA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.535e-20
Identity = 45/113 (39.82%), Postives = 74/113 (65.49%), Query Frame = -1
Query:  503 GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 841
            G S  R+T    +YKKG +FG+ GF +DGMD  ++ + +K+A E  R    P ++E +TYR+RGHS++DP + R   E  +Y  RDP+  ++K ++++   +EA+LKAIE+ +
Sbjct:  186 GTSVARSTFMRDLYKKGASFGIKGFQLDGMDFEEMYDGSKQAAEYVRENSFPLILEVKTYRYRGHSMSDPAKYRSKEEVEQYKERDPLVIIRKTILDNKYVTEADLKAIEQSV 298          
BLAST of CX044035 vs. ExPASy Swiss-Prot
Match: ODPA_RHIME (Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti GN=pdhA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.343e-19
Identity = 50/115 (43.48%), Postives = 74/115 (64.35%), Query Frame = -1
Query:  503 GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELR--DPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 841
            G S  RA++     ++G +FG+PG+ VDGMDV  V+  A EA+E  R G+GP ++E  TYR+RGHS++DP + R  D  +K R +  DPI  +K  L +   A+E ELK I+K++
Sbjct:  207 GTSVSRASAQTDFSQRGASFGIPGYQVDGMDVRAVKAAADEAVEHCRSGKGPIILEMLTYRYRGHSMSDPAKYRSKDEVQKMR-SEHDPIEQVKARLTDKGWATEDELKQIDKEV 320          
BLAST of CX044035 vs. ExPASy Swiss-Prot
Match: ODBA_THET8 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.707e-19
Identity = 55/136 (40.44%), Postives = 74/136 (54.41%), Query Frame = -1
Query:  416 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEK-ARYAARDPITALKKYLIESSLASEAELKAIEKKIXXXXXXXXXXXXXXAPPPRSQLLENVFAD 820
            T  P I  K  AFG+PG+ VDGMDVL    V KEA+ERARRGEGP+LVE   YR+  HS AD D    P E+ A +  +DPI   +++L    L +E   + + ++I               P P   + E+VFA+
Sbjct:  216 THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAE 351          
BLAST of CX044035 vs. ExPASy Swiss-Prot
Match: ODPA_RICTY (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi GN=pdhA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = -1
Query:  503 GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 841
            G S  R+T    +YKKG +FG+ GF +DGMD  ++    K+  E  R    P ++E +TYR+RGHS++DP + R   E A+Y  RD +  +++ ++++  A+E +LKAIE+ +
Sbjct:  186 GTSVSRSTFMRDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDPAKYRSKEEVAKYKERDTLVRIRQIILDNKYATEEDLKAIERSV 298          
BLAST of CX044035 vs. ExPASy Swiss-Prot
Match: ODPA_RICPR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii GN=pdhA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.485e-18
Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = -1
Query:  503 GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKI 841
            G S  R+T    +YKKG +FG+ GF +DGMD  ++    K+  E  R    P ++E +TYR+RGHS++DP + R   E  +Y  RD +  +++ ++++  A+EA+LKAIE+ +
Sbjct:  186 GTSVARSTFMCDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDPAKYRSKEEVEKYKERDTLVRIREIILDNKYATEADLKAIEQSV 298          
BLAST of CX044035 vs. ExPASy Swiss-Prot
Match: ODBA_THET2 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.321e-18
Identity = 54/136 (39.71%), Postives = 73/136 (53.68%), Query Frame = -1
Query:  416 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEK-ARYAARDPITALKKYLIESSLASEAELKAIEKKIXXXXXXXXXXXXXXAPPPRSQLLENVFAD 820
            T  P I  K  AFG+PG+ VDGMDVL    V KEA+ERARRGEGP+LVE   YR+  HS AD D    P E+ A +  +DPI   +++L    L +E   + + ++I               P P   +  +VFA+
Sbjct:  216 THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFADVFAE 351          
The following BLAST results are available for this feature:
BLAST of CX044035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
ODPA_PORYE6.636e-3550.70Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_PORPU8.667e-3551.41Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICBR7.123e-2142.48Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICFE3.535e-2040.71Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICCN3.535e-2039.82Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RHIME1.343e-1943.48Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_THET88.707e-1940.442-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODPA_RICTY1.137e-1838.05Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICPR1.485e-1838.05Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_THET24.321e-1839.712-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_15A02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15A02-A3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044035 ID=CX044035; Name=CX044035; organism=Citrus sinensis; type=EST; length=841bp
TTTTTTTTTTTTTTTTTCTTGCAAATCAAAATTTATGAAATCCCTAAAAT
TGGAAAATTTAAGACATCATCCATTTACAAAACTAGCAGGAACAAAGGAA
TACAGTAAAACCCACAAGCCCTTCGGGTTTGATGTTTGAAATAACAGTAC
AATAAACAATAATAATTGAGGATAAGCTAAAAGAAAAACTTTAAATAGGC
AAACTACAGAAGAGGTAGGAGATGCTGCTTGCTTAAAGGCCCTACATTAC
TGGCGGCAAGTGTAAATAGGGATCCATGGAACTAATTGCCAGTACAAGTA
GATAGAAAAAATGTCTAGCCTAGAAAGGTTAGACTCAGACATGAGCGGTG
CCTTCCGTAAATTTGGGATCTTCACATCTGTAACGCCCATCAGGCCCAAT
ACCAAAACCTTTTGGATCTGCAAAAACATTCTCAAGTAGCTGGCTGCGAG
GTGGAGGAGCACTCTCATCTGCAAACTCAACAGCATCCTCAACCACTTCA
TCTATCTTTTTTTCTATAGCCTTGAGCTCTGCTTCACTAGCTAGACTGCT
CTCGATCAAGTATTTCTTCAAAGCAGTAATTGGATCTCTAGCAGCATAAC
GAGCCTTCTCCGCTGGGTCACGAAGCTCATCAGGGTCAGCCAATGAGTGT
CCTCTAAACCTGTACGTCTCACATTCCACCAATGTTGGTCCTTCACCTCT
CCTAGCTCTTTCAATTGCCTCTTTAGCCACTTCCCTCACCTTCAAAACAT
CCATCCCATCAACGTGAAAACCTGGCATCCCAAATGCTGGTCCCTTTTTA
TAAATCTGAGGATCTGAAGTAGCCCTTAGATGTGACATACC
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