DN134815 | Citrus Genome Database

Overview


Name	DN134815
Unique Name	DN134815
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	559

Libraries


Library Name	Type
Developing fruit albedo at 80 DAFB in Vulnus5 vector	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig10142	contig	Csv1_Contig10142:444..1001.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DN134815 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.949e-24
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 2

Query:  122 KTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFI 286
            K  A A++ L+SQ PG +TIADTVFG+NP IDP FL  AFQ+DPKIV DLQ KFI
Sbjct:  166 KYPAVAFAGLSSQNPGVITIADTVFGSNPQIDPSFLASAFQVDPKIVMDLQTKFI 220

HSP 2 Score: 53.5286 bits (127), Expect = 4.949e-24
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1

Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNXXK 123
            L+VGFVTS+   N L +K L +GDVFVFPQGLIHFQ N  K
Sbjct:  127 LFVGFVTSNP-ENRLFSKTLYEGDVFVFPQGLIHFQVNVGK 166

[Close]

BLAST of DN134815 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.440e-24
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 2

Query:  122 KTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFIN 289
            KT A A++ L+SQ  G +TIADTVFG+ P I+PD L +AFQLD  +VKDL+ KF N
Sbjct:  166 KTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 221

HSP 2 Score: 62.3882 bits (150), Expect = 6.440e-24
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1

Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNXXK 123
            LYVGFV+S+Q NN L AKVLN GDVFVFP G+IHFQ N  K
Sbjct:  126 LYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGK 166

[Close]

BLAST of DN134815 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.440e-24
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 2

Query:  122 KTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFIN 289
            KT A A++ L+SQ  G +TIADTVFG+ P I+PD L +AFQLD  +VKDL+ KF N
Sbjct:  166 KTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 221

HSP 2 Score: 62.3882 bits (150), Expect = 6.440e-24
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1

Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNXXK 123
            LYVGFV+S+Q NN L AKVLN GDVFVFP G+IHFQ N  K
Sbjct:  126 LYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGK 166

[Close]

BLAST of DN134815 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.440e-24
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 2

Query:  122 KTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFIN 289
            KT A A++ L+SQ  G +TIADTVFG+ P I+PD L +AFQLD  +VKDL+ KF N
Sbjct:  167 KTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 222

HSP 2 Score: 62.3882 bits (150), Expect = 6.440e-24
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1

Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNXXK 123
            LYVGFV+S+Q NN L AKVLN GDVFVFP G+IHFQ N  K
Sbjct:  127 LYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGK 167

[Close]

BLAST of DN134815 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.402e-23
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 2

Query:  122 KTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 283
            K  A A++AL+SQ PG +TIA TVFGANP+I+P+ L KAFQ+DP++V DLQ KF
Sbjct:  168 KAPAVAFAALSSQNPGVITIAPTVFGANPAINPNILAKAFQVDPRVVMDLQTKF 221

HSP 2 Score: 55.0694 bits (131), Expect = 2.402e-23
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1

Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNXXK 123
            L VGFVTS+  +N L  KVLN+GDVFVFP+GLIHFQ N  K
Sbjct:  129 LLVGFVTSNP-DNRLFTKVLNEGDVFVFPEGLIHFQANIGK 168

[Close]

BLAST of DN134815 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.126e-23
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 2

Query:  122 KTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 283
            K  A A++AL+SQ PG +TIA+TVFGANP+I+P  L KAFQL+P++V DLQ KF
Sbjct:  168 KAPAVAFAALSSQNPGVITIANTVFGANPAINPTILAKAFQLNPRVVMDLQTKF 221

HSP 2 Score: 55.4546 bits (132), Expect = 3.126e-23
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1

Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNXXK 123
            L VGFVTS+  +N L +KVLN+GDVFVFP+GLIHFQ N  K
Sbjct:  129 LLVGFVTSNP-DNRLFSKVLNEGDVFVFPEGLIHFQANIGK 168

[Close]

BLAST of DN134815 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.127e-23
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 2

Query:  122 KTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFIN 289
            KT A A++ L+SQ  G +TIAD VFG+ P I+PD L +AFQLD  +VKDL+ KF N
Sbjct:  166 KTPAVAFAGLSSQNAGVITIADIVFGSTPPINPDILAQAFQLDVNVVKDLEAKFKN 221

HSP 2 Score: 62.3882 bits (150), Expect = 3.127e-23
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1

Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNXXK 123
            LYVGFV+S+Q NN L AKVLN GDVFVFP G+IHFQ N  K
Sbjct:  126 LYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGK 166

[Close]

BLAST of DN134815 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.069e-23
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 2

Query:  122 KTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFIN 289
            KT A A++ L+SQ  G +TIADTVFG+ P I+PD L +AFQLD  IVKDL+ KF N
Sbjct:  167 KTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNIVKDLEAKFRN 222

HSP 2 Score: 59.3066 bits (142), Expect = 4.069e-23
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1

Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNXXK 123
            LYVGFV+S+Q NN L AKVL  GDVFVFP G+IHFQ N  K
Sbjct:  127 LYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGK 167

[Close]

BLAST of DN134815 vs. ExPASy Swiss-Prot
Match: GL121_ORYSJ (Germin-like protein 12-1 OS=Oryza sativa subsp. japonica GN=Os12g0154700 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.570e-22
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 1

Query:    1 LYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNXXKNK 129
            LYVGFVTS+Q N  N L  K LNKGDVFVFPQGLIHFQFN   +K
Sbjct:  127 LYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDK 171

HSP 2 Score: 58.151 bits (139), Expect = 9.570e-22
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 2

Query:  131 AAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKFINGN 295
            A A +AL+SQ PG +TIA+ VFG+NP I  D L KAFQ+D K V  LQ +F   N
Sbjct:  173 AVAIAALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQFWENN 227

[Close]

BLAST of DN134815 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.247e-21
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 2

Query:  122 KTNAAAYSALNSQFPGEVTIADTVFGANPSIDPDFLGKAFQLDPKIVKDLQNKF 283
            K  A A++ L+SQ  G +TIA+TVFG+NP I P+ L +AFQLD  +VK+LQ KF
Sbjct:  166 KIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKF 219

HSP 2 Score: 60.4622 bits (145), Expect = 1.247e-21
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1

Query:    1 LYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNXXK 123
            LYVGFV+S+Q NN L AKVL+ GDVFVFP G+IHFQ N  K
Sbjct:  126 LYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGK 166

The following BLAST results are available for this feature:

BLAST of DN134815 vs. ExPASy Swiss-Prot

BLAST of DN134815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33


Match Name	E-value	Identity	Description
GL19_ARATH	4.949e-24	67.27	Putative germin-like protein subfamily 1 member 9 ...	[more]
GL117_ARATH	6.440e-24	58.93	Germin-like protein subfamily 1 member 17 OS=Arabi...	[more]
GL115_ARATH	6.440e-24	58.93	Germin-like protein subfamily 1 member 15 OS=Arabi...	[more]
GL114_ARATH	6.440e-24	58.93	Germin-like protein subfamily 1 member 14 OS=Arabi...	[more]
GL110_ARATH	2.402e-23	62.96	Germin-like protein subfamily 1 member 10 OS=Arabi...	[more]
GL111_ARATH	3.126e-23	62.96	Germin-like protein subfamily 1 member 11 OS=Arabi...	[more]
GL119_ARATH	3.127e-23	57.14	Germin-like protein subfamily 1 member 19 OS=Arabi...	[more]
GL113_ARATH	4.069e-23	60.71	Germin-like protein subfamily 1 member 13 OS=Arabi...	[more]
GL121_ORYSJ	9.570e-22	73.33	Germin-like protein 12-1 OS=Oryza sativa subsp. ja...	[more]
GL120_ARATH	1.247e-21	55.56	Germin-like protein subfamily 1 member 20 OS=Arabi...	[more]

Pages

Properties


Property Name	Value
Genbank description	wca01f06 Developing fruit albedo at 80 DAFB in Vulnus5 vector Citrus sinensis cDNA clone wca01f06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN134815 ID=DN134815; Name=DN134815; organism=Citrus sinensis; type=EST; length=559bp
CTTTATGTCGGTTTTGTGACATCAGACCAACTGAATAACACACTCATCGC
AAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGATTC
ACTTCCAATTCAACATNNNGAAAAACAAATGCAGCTGCCTATTCTGCTCT
AAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTTGGAG
CCAATCCTTCAATCGATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGAC
CCAAAGATAGTGAAAGACCTTCAAAATAAGTTCATTAATGGCAATTAGGA
GAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGTGGCTGTA
TTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGAGGTC
TCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACATAATT
GTTATTGTTTTTATTTAGCAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA