CX044022
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX044022 vs. ExPASy Swiss-Prot
Match: SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 8.419e-48 Identity = 92/164 (56.10%), Postives = 116/164 (70.73%), Query Frame = -3 Query: 314 DFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 805 DF+A AW KCSYD QL+ LL QY+V E ELVTGHI + K +S+KQG++K+RLK +YSALRKEF+ FE + SD + +DEKN L+E KASAWYQVTYHP+WV+KS + D LSFAWI DYLARIK+RC ++ KPV LA Y+++RI Sbjct: 1055 DFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEIPASLSFAWIPVDYLARIKLRCHGKVRVEGQKPVERLAAYISERI 1218
BLAST of CX044022 vs. ExPASy Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 6.302e-11 Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = -3 Query: 386 DFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIR 805 D+I +A K YD +L L++ Y + E E+++G I M K ++K + ++ + +LRKE R F +M D D E KASAWY VTYHPE+ + E+ +SF W + L RIK R Sbjct: 593 DYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSD--ADAIRLAVRSLRKEARSRFSEMSLDDNGHGHDAS----EAKASAWYHVTYHPEFWGCYNEGYERPH-----FISFPWCIYEKLLRIKQR 721 The following BLAST results are available for this feature:
BLAST of CX044022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 2
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX044022 ID=CX044022; Name=CX044022; organism=Citrus sinensis; type=EST; length=810bpback to top |