CX044010

Overview
NameCX044010
Unique NameCX044010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM11_ARATH (Glutamyl-tRNA reductase 1, chloroplastic OS=Arabidopsis thaliana GN=HEMA1 PE=2 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 9.641e-65
Identity = 131/172 (76.16%), Postives = 141/172 (81.98%), Query Frame = 1
Query:  301 QSQLGQQ-IRVACKPNRNERNLQQSRRGVVRCEVAVDPSSAS------ALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            Q+ LG   +RV  K NR  R L Q      RCE++    SAS      ALEQLK SA DRYTKERSSIVVIGLS+HTAPVEMREKLAIPEAEWPRAI ELC LNHIEEAAVLSTCNRMEIYV+ALSQHRGVKEVTEWMSKTSGIPV+E+C+HRFLLYNKDATQH+FEVSAGL
Sbjct:   34 QTPLGLNGVRVLPKNNRTRRGLIQK----ARCELSASSDSASNAASISALEQLKNSAADRYTKERSSIVVIGLSIHTAPVEMREKLAIPEAEWPRAIAELCGLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNKDATQHIFEVSAGL 201          
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM12_ARATH (Glutamyl-tRNA reductase 2, chloroplastic OS=Arabidopsis thaliana GN=HEMA2 PE=2 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 8.162e-64
Identity = 126/160 (78.75%), Postives = 136/160 (85.00%), Query Frame = 1
Query:  322 IRVACKPNRNERNLQQSRRGVVRCEVAVDPSSAS--ALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            IR     NRN+R L Q      RCE++    +AS  ALEQLK SA DRYTKERSSIVVIGLS+HTAPVEMREKLAIPEAEWPRAI ELC LNHIEEAAVLSTCNRMEIYV+ALSQHRGVKEVTEWMSKTSGIPV+E+C+HRFLLYNKD TQH+FEVSAGL
Sbjct:   37 IRALPMNNRNKRGLIQR----ARCEISPSNKAASISALEQLKTSAIDRYTKERSSIVVIGLSIHTAPVEMREKLAIPEAEWPRAIAELCGLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNKDVTQHIFEVSAGL 192          
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM11_CUCSA (Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.290e-63
Identity = 130/172 (75.58%), Postives = 139/172 (80.81%), Query Frame = 1
Query:  334 CKPNRNERNLQQSRRGV-----VRCEVA----------VDP---SSASALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            CK  R  R L Q R GV      +CE+A          +DP   S+ SALEQLK SA DRYTKERSSIVVIGLS+HT PVEMREKLAIPEAEWPRAIGELC LNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPV+E+C+HRFLLYN DATQH+FEVSAGL
Sbjct:   38 CKSIRTRRILFQ-RTGVSSFTPFKCELASSDVLVQNDEIDPPKSSNLSALEQLKTSAVDRYTKERSSIVVIGLSIHTTPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNNDATQHIFEVSAGL 208          
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM12_CUCSA (Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumis sativus GN=HEMA2 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.060e-55
Identity = 106/125 (84.80%), Postives = 115/125 (92.00%), Query Frame = 1
Query:  421 SALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            SALE LK S+ +RYTKER SIVVIGL+VHTAPVE+REKLAIPEA+WP  IGELC LNHIEEAAVLSTCNR+EIYVVALSQHRGVKEVTEWMSK SGIP++ELC+HR LLYN DATQHLFEVSAGL
Sbjct:   76 SALELLKTSSVNRYTKERISIVVIGLNVHTAPVELREKLAIPEAQWPPGIGELCALNHIEEAAVLSTCNRIEIYVVALSQHRGVKEVTEWMSKRSGIPISELCKHRVLLYNTDATQHLFEVSAGL 200          
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM11_HORVU (Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeum vulgare GN=HEMA1 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.549e-49
Identity = 104/147 (70.75%), Postives = 117/147 (79.59%), Query Frame = 1
Query:  373 RRGVVRCEVAVDPSSAS------ALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            R GVVRC+   D  +AS      ALEQ K SA DRY KE+SSI VIGLSVHTAPVEMREKLA+ E  WPRAI EL +LNHIEEAAVLSTCNRMEIYVVALS +RG++EV +WMSK SGIP +EL EH F+L + DAT+HLFEVSAGL
Sbjct:   37 RSGVVRCDAGGDAQAASKAASITALEQFKISA-DRYMKEKSSIAVIGLSVHTAPVEMREKLAVAEELWPRAISELTSLNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSDATRHLFEVSAGL 182          
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_ORYSJ (Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os10g0502400 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.807e-48
Identity = 102/148 (68.92%), Postives = 116/148 (78.38%), Query Frame = 1
Query:  382 VVRCEVAVDP----------SSASALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            VVRC+  V+           +S +ALEQ K SA DRY KERSSI VIGLSVHTAPVEMREKLA+ E  WPRAI EL +LNHIEEAAVLSTCNRMEIYVVALS +RG++EV +WMSK SGIP +EL EH F+L + DAT+HLFEVSAGL
Sbjct:   46 VVRCDAGVEAQAQAQAVAKAASVAALEQFKISA-DRYMKERSSIAVIGLSVHTAPVEMREKLAVAEELWPRAISELTSLNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSDATRHLFEVSAGL 192          
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_ORYSI (Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_033071 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 4.807e-48
Identity = 102/148 (68.92%), Postives = 116/148 (78.38%), Query Frame = 1
Query:  382 VVRCEVAVDP----------SSASALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            VVRC+  V+           +S +ALEQ K SA DRY KERSSI VIGLSVHTAPVEMREKLA+ E  WPRAI EL +LNHIEEAAVLSTCNRMEIYVVALS +RG++EV +WMSK SGIP +EL EH F+L + DAT+HLFEVSAGL
Sbjct:   46 VVRCDAGVEAQAQAQAVAKAASVAALEQFKISA-DRYMKERSSIAVIGLSVHTAPVEMREKLAVAEELWPRAISELTSLNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSDATRHLFEVSAGL 192          
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM13_HORVU (Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeum vulgare GN=HEMA3 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.497e-45
Identity = 94/146 (64.38%), Postives = 112/146 (76.71%), Query Frame = 1
Query:  382 VVRCE--------VAVDPSSASALEQLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            VVRC+        +A   +S +ALEQ K SA DRY KE+SSI VIGLS+HTAPVEMREKLA+ E  WPRA+ EL NLNHIE+AAVLS CNRMEIYVVALS +RG++E+ +WMS  SGIP  EL EH F+  + DAT+HLFEVS+GL
Sbjct:   44 VVRCDAGPGVPAQMAAMAASVAALEQFKISA-DRYMKEKSSIAVIGLSIHTAPVEMREKLAVAEELWPRAVAELTNLNHIEKAAVLSPCNRMEIYVVALSWNRGIREIVDWMSMKSGIPAVELREHLFMFRDSDATRHLFEVSSGL 188          
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM12_HORVU (Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vulgare GN=HEMA2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.090e-43
Identity = 90/121 (74.38%), Postives = 102/121 (84.30%), Query Frame = 1
Query:  433 QLKASAPDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            Q K SA DRY KE+SSI VIGLSVHTAPV+MREKLA+ E  WPRAI EL +LNHIEEAAVLSTCNRMEIYVVALS +RG++EV +WMSK SGIP +EL EH F+L +  AT+HLFEVSAGL
Sbjct:    1 QFKISA-DRYIKEKSSIAVIGLSVHTAPVDMREKLAVAEELWPRAISELTSLNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSGATRHLFEVSAGL 120          
BLAST of CX044010 vs. ExPASy Swiss-Prot
Match: HEM1_CYAP4 (Glutamyl-tRNA reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=hemA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.965e-25
Identity = 55/106 (51.89%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  478 SIVVIGLSVHTAPVEMREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGIPVAELCEHRFLLYNKDATQHLFEVSAGL 795
            +I V+GLS  TAPVE+REKL++PE     AI +LC+  HIEE A+LSTCNR+EIY+V      G++EVT+++S+ S +P+ EL +H F+L ++DA  HL  V+AGL
Sbjct:    2 NIAVVGLSHKTAPVEVREKLSVPEDGLEGAIAQLCSYPHIEEVAILSTCNRLEIYIVTSETESGIREVTQFLSEWSHLPLRELRQHLFILLHQDAVMHLMRVAAGL 107          
The following BLAST results are available for this feature:
BLAST of CX044010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
HEM11_ARATH9.641e-6576.16Glutamyl-tRNA reductase 1, chloroplastic OS=Arabid... [more]
HEM12_ARATH8.162e-6478.75Glutamyl-tRNA reductase 2, chloroplastic OS=Arabid... [more]
HEM11_CUCSA5.290e-6375.58Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumi... [more]
HEM12_CUCSA4.060e-5584.80Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumi... [more]
HEM11_HORVU2.549e-4970.75Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeu... [more]
HEM1_ORYSJ4.807e-4868.92Glutamyl-tRNA reductase, chloroplastic OS=Oryza sa... [more]
HEM1_ORYSI4.807e-4868.92Glutamyl-tRNA reductase, chloroplastic OS=Oryza sa... [more]
HEM13_HORVU6.497e-4564.38Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeu... [more]
HEM12_HORVU2.090e-4374.38Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vu... [more]
HEM1_CYAP41.965e-2551.89Glutamyl-tRNA reductase OS=Cyanothece sp. (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14G11_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G11-N22-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044010 ID=CX044010; Name=CX044010; organism=Citrus sinensis; type=EST; length=796bp
TTTTGCAGTCGCCAAAGACACCAAATCAAACCAAATACGAAAAAGCTCCA
CGGAGATTTGTTCAACAGCCCATAAAACCTCTGTATACCCTCCCATCCGG
CGTCAATTTTTTTGAGGGGTCTGGGGGTTTTATCATTATTATCATTAGGG
CACAAGATAATTTTTGAACGAAGATTCAGAATCATGTCGTTTTCAAGTGG
ATTTGCCACCGCTTTGGCCGGTTCAAAGATGGAAACAACTTTGTTATTCA
ATCTTTCTTCTTCCTCTTCTTCTTCTTCAGCGTTGTTTATGAAGGGTGTT
CAAAGTCAACTCGGTCAACAAATACGGGTGGCTTGTAAACCAAATCGGAA
CGAGAGAAATTTGCAGCAGAGCCGGAGAGGCGTTGTTAGATGCGAAGTCG
CAGTTGATCCCTCCTCCGCTTCCGCCCTCGAGCAGCTCAAGGCCTCTGCC
CCTGACCGATACACGAAGGAAAGGAGCAGCATTGTGGTCATTGGGCTCAG
TGTTCACACTGCACCTGTTGAGATGCGAGAAAAACTTGCCATTCCTGAGG
CTGAATGGCCACGGGCCATCGGAGAGTTGTGTAACTTAAATCATATAGAG
GAGGCCGCTGTCCTTAGCACCTGCAACAGAATGGAGATATATGTTGTAGC
TCTCTCTCAGCATCGTGGAGTCAAAGAAGTGACTGAGTGGATGTCAAAGA
CAAGTGGGATCCCCGTTGCAGAGCTTTGTGAGCACCGGTTTTTGCTGTAT
AACAAAGATGCTACACAGCATCTCTTTGAAGTATCAGCGGGTCTTG
back to top