CX044000

Overview
NameCX044000
Unique NameCX044000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.209e-19
Identity = 66/170 (38.82%), Postives = 93/170 (54.71%), Query Frame = -3
Query:  282 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTES*LQF*SVHVCSEETSFSNKKLLS 785
            SRG  ++TMGS+  AK AI   DGS VGGR ++V F  +          A I    + FV +SPHKLYV NLSWA+  + LR+ F      +SA+V++DR    +R FGFI+FSS    ++AL ++N  +  GR +  R  V   ++ +    V   S E    N +LLS
Sbjct:  154 SRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL--RLNVAGQKAPVSSPPVVETSPENDSDNSELLS 320          
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.478e-17
Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = -3
Query:  357 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDRT 785
            SRG G++TM ++  A+ A+   +  DV GR + V      N   R  E    PP+    +E  +++YVGN+ W +    L   F   G VVSARV++DR+   +R FGF++ +S+AE  DA  +L+G    GRTI V    DR+
Sbjct:  176 SRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRS 310          
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 50/143 (34.97%), Postives = 74/143 (51.75%), Query Frame = -3
Query:  360 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 785
            SRG G++TM ++  A+ A+  L+G D+ GR++ V  +    S  R       P  ++         YVGNL W V    L   F   G VVSARV+ DR+   +R FGF++ SS++E  DA  +L+G    GR + V    +R
Sbjct:   95 SRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRV---------YVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228          
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.866e-15
Identity = 49/143 (34.27%), Postives = 72/143 (50.35%), Query Frame = -3
Query:  360 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 785
            SRG G++TM ++  A  A+      D+ GR + V  +    SR   A     P          +++YVGN+ W +    L   F   G VVSARV+ DR+   +R FGF++ SS+AE   A+ +L+G    GRTI V    +R
Sbjct:  137 SRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT---------YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270          
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.530e-14
Identity = 51/143 (35.66%), Postives = 74/143 (51.75%), Query Frame = -3
Query:  360 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDR 785
            SRG G++TM S++ A+ A+   +  D+ GR + V  +    SR   A           VYE   ++YVGNL W V    L   F   G VV ARV++DR+   +R FGF++ S   E + A+S L+G +  GR I V    +R
Sbjct:  190 SRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPR---------VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323          
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.295e-13
Identity = 49/141 (34.75%), Postives = 75/141 (53.19%), Query Frame = -3
Query:  378 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM----NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 785
            SRG G++TM S    + A    +G ++ GR +RV          NS  R   +     +    ++S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+++SS  E + A+ SL+G D  GR I V
Sbjct:  127 SRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267          
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = -3
Query:  378 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 785
            SRG G++TM S    + A    +G ++ GR +RV        R  ++    S     F  +S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+++SS  E + A+ SL+G D  GR I V
Sbjct:  127 SRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSF--DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261          
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.870e-12
Identity = 51/160 (31.87%), Postives = 76/160 (47.50%), Query Frame = -3
Query:  360 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-----------------RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 785
            SRG G++TM +    + A    +G ++ GR +RV        R                  R+  +     +     +S +++YVGNLSW V    L+  F   G VV A+V++DR    +R FGF+++SS  E  DA  SLNG D  GR+I V    +R
Sbjct:  127 SRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286          
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.067e-11
Identity = 49/143 (34.27%), Postives = 79/143 (55.24%), Query Frame = -3
Query:  372 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 785
            SR  G++TM ++  A   I  L+ +++GGR+++V  +      M+  T  AE         FV ESP+K+Y+GNL+  V  E L++ F   G V+ A+V        +  FGF+SFSS+ E +AA+ +LN +   G+ I V +
Sbjct:  124 SRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259          
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = -3
Query:  360 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVREGVDR 605
            E  ++ +VG L+WA   EDL+  F +FG V+ +++++DR+   +R FGF++F  + A RDA   +NG +  GR I V E   R
Sbjct:    3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85          
The following BLAST results are available for this feature:
BLAST of CX044000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ROC5_NICSY1.209e-1938.8233 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY1.478e-1736.8131 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL4.025e-1534.9728 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY6.866e-1534.2728 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH1.530e-1435.6631 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_NICPL1.295e-1334.7530 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY2.885e-1335.7729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC2_NICSY1.870e-1231.8829 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
RRP2_SPIOL2.067e-1134.2730S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
GRP8_ARATH3.526e-1138.55Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G06-N12-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044000 ID=CX044000; Name=CX044000; organism=Citrus sinensis; type=EST; length=790bp
GCTCATGCCACCAAAATTGTCATTGATTATGAACACGGAAATGGCAAACT
GAAATCAAGCTTCACGATGAGGAATACAGCAACACTTAAAATCACAGACA
CTTAAATCAAACTAGTAAACCAAAATCAACCACTACCTGCAACACCTGCA
CCTCAGTATTTTTAACATAATGTTTACATATGAAAAAGCCTCAGGGACTT
CCCAGACACAAGATCTTGAATTCTGGTGGGCATTCGTACCCGCTATCCTG
CACCACCTTTCAGCCAAGGAGGATACTCCAAGCTAAGCAATTTCTTGTTA
CTAAAAGAAGTTTCTTCACTACAAACATGAACCGATCAAAACTGCAATCA
AGACTCAGTTCTGTCAACACCTTCTCTAACAATTATTGTCCGACCCCGAA
AGTCTGTTCCATTTAAAGAAAGTGCAGCATCACGTTCTGCGTCAGAAGAG
AAGGAAATAAACCCAAAAACTCGGGTGGTTTGTCCTTTACGATCGTGCAA
CACTCTAGCACTGACCACAGTCCCAAACCGGCCAAAATGATTTCTCAAAT
CCTCAGGTTTTACAGCCCAGGAAAGATTGCCAACATATAATTTATGAGGG
CTTTCATAGACAAAAATCTTCTTTGGTGGTGAAATCAATGCCTCAGCATT
CCTAGTCCGCGAATTCATATCAATTGAAAATCTCACCCGCATTTCACGTC
CACCCACATCAGATCCGTCCAATGCAATAATTGCATTTTTTGCTGAATTG
ATCGAACCCATTGTCAGGTAACCGCATCCACGACTTATGC
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