CX044000
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.209e-19 Identity = 66/170 (38.82%), Postives = 93/170 (54.71%), Query Frame = -3 Query: 282 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTES*LQF*SVHVCSEETSFSNKKLLS 785 SRG ++TMGS+ AK AI DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR+ F +SA+V++DR +R FGFI+FSS ++AL ++N + GR + R V ++ + V S E N +LLS Sbjct: 154 SRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL--RLNVAGQKAPVSSPPVVETSPENDSDNSELLS 320
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.478e-17 Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = -3 Query: 357 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDRT 785 SRG G++TM ++ A+ A+ + DV GR + V N R E PP+ +E +++YVGN+ W + L F G VVSARV++DR+ +R FGF++ +S+AE DA +L+G GRTI V DR+ Sbjct: 176 SRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRS 310
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15 Identity = 50/143 (34.97%), Postives = 74/143 (51.75%), Query Frame = -3 Query: 360 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 785 SRG G++TM ++ A+ A+ L+G D+ GR++ V + S R P ++ YVGNL W V L F G VVSARV+ DR+ +R FGF++ SS++E DA +L+G GR + V +R Sbjct: 95 SRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRV---------YVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.866e-15 Identity = 49/143 (34.27%), Postives = 72/143 (50.35%), Query Frame = -3 Query: 360 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 785 SRG G++TM ++ A A+ D+ GR + V + SR A P +++YVGN+ W + L F G VVSARV+ DR+ +R FGF++ SS+AE A+ +L+G GRTI V +R Sbjct: 137 SRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPT---------YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.530e-14 Identity = 51/143 (35.66%), Postives = 74/143 (51.75%), Query Frame = -3 Query: 360 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDR 785 SRG G++TM S++ A+ A+ + D+ GR + V + SR A VYE ++YVGNL W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G + GR I V +R Sbjct: 190 SRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPR---------VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.295e-13 Identity = 49/141 (34.75%), Postives = 75/141 (53.19%), Query Frame = -3 Query: 378 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM----NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 785 SRG G++TM S + A +G ++ GR +RV NS R + + ++S +++YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A+ SL+G D GR I V Sbjct: 127 SRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13 Identity = 49/137 (35.77%), Postives = 74/137 (54.01%), Query Frame = -3 Query: 378 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 785 SRG G++TM S + A +G ++ GR +RV R ++ S F +S +++YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A+ SL+G D GR I V Sbjct: 127 SRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSF--DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.870e-12 Identity = 51/160 (31.87%), Postives = 76/160 (47.50%), Query Frame = -3 Query: 360 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-----------------RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 785 SRG G++TM + + A +G ++ GR +RV R R+ + + +S +++YVGNLSW V L+ F G VV A+V++DR +R FGF+++SS E DA SLNG D GR+I V +R Sbjct: 127 SRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.067e-11 Identity = 49/143 (34.27%), Postives = 79/143 (55.24%), Query Frame = -3 Query: 372 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 785 SR G++TM ++ A I L+ +++GGR+++V + M+ T AE FV ESP+K+Y+GNL+ V E L++ F G V+ A+V + FGF+SFSS+ E +AA+ +LN + G+ I V + Sbjct: 124 SRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259
BLAST of CX044000 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11 Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = -3 Query: 360 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVREGVDR 605 E ++ +VG L+WA EDL+ F +FG V+ +++++DR+ +R FGF++F + A RDA +NG + GR I V E R Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85 The following BLAST results are available for this feature:
BLAST of CX044000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CX044000 ID=CX044000; Name=CX044000; organism=Citrus sinensis; type=EST; length=790bpback to top |