CX043999

Overview
NameCX043999
Unique NameCX043999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.341e-27
Identity = 77/196 (39.29%), Postives = 109/196 (55.61%), Query Frame = 2
Query:  260 DDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826
            +++  +EE   R          LYV NLP S   S+L E+F   GTV +VE+  +  T  SRG  ++TMGS+  AK AI   DGS VGGR ++V F  +          A I    + FV +SPHKLYV NLSWA+  + LR+ F      +SA+V++DR    +R FGFI+FSS    ++AL ++N  +  GR +
Sbjct:   94 EEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL 288          
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.244e-25
Identity = 72/202 (35.64%), Postives = 106/202 (52.48%), Query Frame = 2
Query:  251 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDRT 853
            +EV+ D   EE +      +L+V NLP   D   L  +F+  G V   EV  N +T  SRG G++TM ++  A+ A+   +  DV GR + V      N   R  E    PP+    +E  +++YVGN+ W +    L   F   G VVSARV++DR+   +R FGF++ +S+AE  DA  +L+G    GRTI V    DR+
Sbjct:  118 DEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRS 310          
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.111e-23
Identity = 69/192 (35.94%), Postives = 105/192 (54.69%), Query Frame = 2
Query:  260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 832
            D D  VEE R+ +   +++V NLP S D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV        R  +  +     +    ++S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+++SS  E + A+ SL+G D  GR I V
Sbjct:   72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS--SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261          
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.778e-22
Identity = 67/199 (33.67%), Postives = 98/199 (49.25%), Query Frame = 2
Query:  257 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 850
            V +    EE +  +   +L+V NLP   D   L ++F+  G V   EV  N ET  SRG G++TM ++  A  A+      D+ GR + V  +    SR   A     P          +++YVGN+ W +    L   F   G VVSARV+ DR+   +R FGF++ SS+AE   A+ +L+G    GRTI V    +R
Sbjct:   81 VGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP---------TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270          
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.778e-22
Identity = 73/203 (35.96%), Postives = 105/203 (51.72%), Query Frame = 2
Query:  254 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 850
            +V D+  VE  +  + P E   L+V NLP   D  +L  +F   G V   EV  N ET  SRG G++TM ++  A+ A+  L+G D+ GR++ V  +    S  R        P+  F  E   ++YVGNL W V    L   F   G VVSARV+ DR+   +R FGF++ SS++E  DA  +L+G    GR + V    +R
Sbjct:   35 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF--EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228          
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 70/196 (35.71%), Postives = 105/196 (53.57%), Query Frame = 2
Query:  260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 832
            D D  VEE R+ +   +++V NL  S D + L E+F+  G V  VEV  +  TG SRG G++TM S    + A    +G ++ GR +RV          NS  R   +     +    ++S +++YVGNL+W V  + L   F   G VV A+V++DR    +R FGF+++SS  E + A+ SL+G D  GR I V
Sbjct:   72 DGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267          
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.380e-21
Identity = 72/220 (32.73%), Postives = 108/220 (49.09%), Query Frame = 2
Query:  245 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-----------------RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 850
            G ++++DD  V E    +   +L+V NLP S D + L  +F+  G V  VEV  +  TG SRG G++TM +    + A    +G ++ GR +RV        R                  R+  +     +     +S +++YVGNLSW V    L+  F   G VV A+V++DR    +R FGF+++SS  E  DA  SLNG D  GR+I V    +R
Sbjct:   67 GFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286          
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.664e-20
Identity = 70/205 (34.15%), Postives = 102/205 (49.76%), Query Frame = 2
Query:  239 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDR 850
            +V    V + +   EP   A+   L+V NL    +   L  +F+  GTV   EV  N ET  SRG G++TM S++ A+ A+   +  D+ GR + V  +    SR         P +   VYE   ++YVGNL W V    L   F   G VV ARV++DR+   +R FGF++ S   E + A+S L+G +  GR I V    +R
Sbjct:  131 DVSEGAVSERAEFPEPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323          
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.842e-20
Identity = 70/217 (32.26%), Postives = 110/217 (50.69%), Query Frame = 2
Query:  254 EVDDDSSVE----EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-------------SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 850
            EV++D   +    + +S +   +L+V NLP + D ++L ++F+  G V  VEV  +  TG SRG G++TM S++  + A    +G ++ GR +RV        R    +     P+  F                S +++YVGNLSW V    L + F   G VV ARV++DR    ++ FGF+++ S  E ++A  SL+G D  GR I V E   R
Sbjct:   70 EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE---DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283          
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.544e-17
Identity = 61/181 (33.70%), Postives = 99/181 (54.70%), Query Frame = 2
Query:  311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 838
            LYV N+PR+ +  EL  + +  G +   EV  +  +G SR  G++TM ++  A   I  L+ +++GGR+++V  +      M+  T  AE         FV ESP+K+Y+GNL+  V  E L++ F   G V+ A+V        +  FGF+SFSS+ E +AA+ +LN +   G+ I V +
Sbjct:   86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259          
The following BLAST results are available for this feature:
BLAST of CX043999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
ROC5_NICSY5.341e-2739.2933 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY2.244e-2535.6431 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY6.111e-2335.9429 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC3_NICSY1.778e-2233.6728 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL1.778e-2235.9628 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC1_NICPL3.961e-2235.7130 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY4.380e-2132.7329 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC3_ARATH1.664e-2034.1531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_ARATH4.842e-2032.26Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RRP2_SPIOL6.544e-1733.7030S ribosomal protein 2, chloroplastic OS=Spinacia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G06-N12-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043999 ID=CX043999; Name=CX043999; organism=Citrus sinensis; type=EST; length=866bp
CTTCTCAATGGCTGCCGCTACGGGCTTCTTAACAACTTCTTCCTCTCTGT
TCACAAAAATTACTCCTCCAGCTACACCAAAACGATTCGGTTTTACCTCT
CTGCCAACTTTAATTAATTTCCAGTACCCAAAGCTCTCATCTTGCTGGTC
CCGCTCTCACCCAGCTGGGTTTCGCTCAGTTCTTGCGGTGGTAGATGAGG
AAGCGGTAGTAGTTGAAGATGAGATTAACGGCAAGGATAATGTTGGTGGA
AACGAAGTGGACGACGACAGTTCAGTCGAAGAGCCAAGGAGCCGCGCAAG
GCCCTGTGAGTTATACGTGTGTAACTTGCCCAGGAGCTTTGACATTTCAG
AGCTTCTTGAGATGTTCAAGCCTTTTGGAACCGTTCTTTCCGTTGAGGTT
TCGAGGAATCCCGAAACAGGCATAAGTCGTGGATGCGGTTACCTGACAAT
GGGTTCGATCAATTCAGCAAAAAATGCAATTATTGCATTGGACGGATCTG
ATGTGGGTGGACGTGAAATGCGGGTGAGATTTTCAATTGATATGAATTCG
CGGACTAGGAATGCTGAGGCATTGATTTCACCACCAAAGAAGATTTTTGT
CTATGAAAGCCCTCATAAATTATATGTTGGCAATCTTTCCTGGGCTGTAA
AACCTGAGGATTTGAGAAATCATTTTGGCCGGTTTGGGACTGTGGTCAGT
GCTAGAGTGTTGCACGATCGTAAAGGACAAACCACCCGAGTTTTTGGGTT
TATTTCCTTCTCTTCTGACGCAGAACGTGATGCTGCACTTTCTTTAAATG
GAACAGACTTTCGGGGTCGGACAATAATTGTTAGAGAAGGTGTTGACAGA
ACTGAGTCTTGATTGC
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