CX043999
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 5.341e-27 Identity = 77/196 (39.29%), Postives = 109/196 (55.61%), Query Frame = 2 Query: 260 DDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826 +++ +EE R LYV NLP S S+L E+F GTV +VE+ + T SRG ++TMGS+ AK AI DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR+ F +SA+V++DR +R FGFI+FSS ++AL ++N + GR + Sbjct: 94 EEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL 288
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.244e-25 Identity = 72/202 (35.64%), Postives = 106/202 (52.48%), Query Frame = 2 Query: 251 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDRT 853 +EV+ D EE + +L+V NLP D L +F+ G V EV N +T SRG G++TM ++ A+ A+ + DV GR + V N R E PP+ +E +++YVGN+ W + L F G VVSARV++DR+ +R FGF++ +S+AE DA +L+G GRTI V DR+ Sbjct: 118 DEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRS 310
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 6.111e-23 Identity = 69/192 (35.94%), Postives = 105/192 (54.69%), Query Frame = 2 Query: 260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 832 D D VEE R+ + +++V NLP S D + L E+F+ G V VEV + TG SRG G++TM S + A +G ++ GR +RV R + + + ++S +++YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A+ SL+G D GR I V Sbjct: 72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS--SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.778e-22 Identity = 67/199 (33.67%), Postives = 98/199 (49.25%), Query Frame = 2 Query: 257 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 850 V + EE + + +L+V NLP D L ++F+ G V EV N ET SRG G++TM ++ A A+ D+ GR + V + SR A P +++YVGN+ W + L F G VVSARV+ DR+ +R FGF++ SS+AE A+ +L+G GRTI V +R Sbjct: 81 VGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP---------TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.778e-22 Identity = 73/203 (35.96%), Postives = 105/203 (51.72%), Query Frame = 2 Query: 254 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 850 +V D+ VE + + P E L+V NLP D +L +F G V EV N ET SRG G++TM ++ A+ A+ L+G D+ GR++ V + S R P+ F E ++YVGNL W V L F G VVSARV+ DR+ +R FGF++ SS++E DA +L+G GR + V +R Sbjct: 35 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF--EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22 Identity = 70/196 (35.71%), Postives = 105/196 (53.57%), Query Frame = 2 Query: 260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 832 D D VEE R+ + +++V NL S D + L E+F+ G V VEV + TG SRG G++TM S + A +G ++ GR +RV NS R + + ++S +++YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A+ SL+G D GR I V Sbjct: 72 DGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.380e-21 Identity = 72/220 (32.73%), Postives = 108/220 (49.09%), Query Frame = 2 Query: 245 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-----------------RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 850 G ++++DD V E + +L+V NLP S D + L +F+ G V VEV + TG SRG G++TM + + A +G ++ GR +RV R R+ + + +S +++YVGNLSW V L+ F G VV A+V++DR +R FGF+++SS E DA SLNG D GR+I V +R Sbjct: 67 GFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.664e-20 Identity = 70/205 (34.15%), Postives = 102/205 (49.76%), Query Frame = 2 Query: 239 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDR 850 +V V + + EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S++ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G + GR I V +R Sbjct: 131 DVSEGAVSERAEFPEPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.842e-20 Identity = 70/217 (32.26%), Postives = 110/217 (50.69%), Query Frame = 2 Query: 254 EVDDDSSVE----EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-------------SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 850 EV++D + + +S + +L+V NLP + D ++L ++F+ G V VEV + TG SRG G++TM S++ + A +G ++ GR +RV R + P+ F S +++YVGNLSW V L + F G VV ARV++DR ++ FGF+++ S E ++A SL+G D GR I V E R Sbjct: 70 EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE---DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
BLAST of CX043999 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.544e-17 Identity = 61/181 (33.70%), Postives = 99/181 (54.70%), Query Frame = 2 Query: 311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 838 LYV N+PR+ + EL + + G + EV + +G SR G++TM ++ A I L+ +++GGR+++V + M+ T AE FV ESP+K+Y+GNL+ V E L++ F G V+ A+V + FGF+SFSS+ E +AA+ +LN + G+ I V + Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNK 259 The following BLAST results are available for this feature:
BLAST of CX043999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043999 ID=CX043999; Name=CX043999; organism=Citrus sinensis; type=EST; length=866bpback to top |