CX043998

Overview
NameCX043998
Unique NameCX043998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043998 vs. ExPASy Swiss-Prot
Match: PT3K1_SOLTU (Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.275e-46
Identity = 105/219 (47.95%), Postives = 138/219 (63.01%), Query Frame = 2
Query:  110 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVAANNPTLLAIS 763
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GT TGGL+T M+T PN+   PF+AAKDI  FY +HGPKIF     S F           L+ PKYDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  +    +A++ DIC ST+AAPTYFPPHY  T  S +G    F+LVDG VAA +P+LL+IS
Sbjct:   14 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTGTGGLLTAMITTPNENNRPFAAAKDIIPFYFDHGPKIFEP---SGFH----------LVEPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKTPELDAKMYDICYSTAAAPTYFPPHYFATNTS-NGDQYDFNLVDGDVAAVDPSLLSIS 218          
BLAST of CX043998 vs. ExPASy Swiss-Prot
Match: PATT5_SOLTU (Patatin-T5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.275e-46
Identity = 107/220 (48.64%), Postives = 140/220 (63.64%), Query Frame = 2
Query:  110 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAIS 763
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGPKIF Q S S F             GPKYDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAPT+FPPHY  T  S +G    F+LVDG VA  ++P LL+IS
Sbjct:   26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAMITTPNETNRPFAAAKDIVPFYFEHGPKIF-QSSGSIF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTFFPPHYFATNTS-NGDKYEFNLVDGAVATVDDPALLSIS 230          
BLAST of CX043998 vs. ExPASy Swiss-Prot
Match: PT2K4_SOLTU (Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.296e-46
Identity = 106/220 (48.18%), Postives = 138/220 (62.73%), Query Frame = 2
Query:  110 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAIS 763
            G+ +TVLS              L FLE +LQE+D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI        LGP YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  E+   +A++ DIC ST+AAP YFPPHY  T  S +G    F+LVDGGVA   +P LL++S
Sbjct:   14 GEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------LGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAESPQLDAKMYDICYSTAAAPIYFPPHYFVTHTS-NGDRYEFNLVDGGVATVGDPALLSLS 218          
BLAST of CX043998 vs. ExPASy Swiss-Prot
Match: PAT0_SOLTU (Patatin OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.773e-45
Identity = 104/220 (47.27%), Postives = 137/220 (62.27%), Query Frame = 2
Query:  110 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAIS 763
            G+ +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  E+   +A++ DIC ST+AAP YFPPH+  T  S +G T  F+LVDG VA   +P LL++S
Sbjct:   26 GEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAESPQLDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGAVATVGDPALLSLS 230          
BLAST of CX043998 vs. ExPASy Swiss-Prot
Match: PAT07_SOLTU (Patatin-07 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.621e-45
Identity = 107/231 (46.32%), Postives = 141/231 (61.04%), Query Frame = 2
Query:   86 MATAGSAEGK---KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAIS 763
            +AT  S   K    +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A+++DIC ST+AAPTYFPPHY  T  S +G    F+LVDG VA   +P LL++S
Sbjct:   15 LATTSSTCAKLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYFPPHYFATNTS-NGDKYEFNLVDGAVATVADPALLSVS 230          
BLAST of CX043998 vs. ExPASy Swiss-Prot
Match: PAT05_SOLTU (Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.729e-45
Identity = 101/220 (45.91%), Postives = 137/220 (62.27%), Query Frame = 2
Query:  110 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAIS 763
            G+ +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY +HGP IF   +   F             GPKYDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A+++DIC ST+AAPTYFPPHY  T  S +G    F+LVDG VA   +P LL++S
Sbjct:   26 GEMVTVLSIDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMSDICYSTAAAPTYFPPHYFATNTS-NGDKYEFNLVDGAVATVADPALLSVS 231          
BLAST of CX043998 vs. ExPASy Swiss-Prot
Match: PAT03_SOLTU (Patatin-03 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.177e-45
Identity = 101/220 (45.91%), Postives = 136/220 (61.82%), Query Frame = 2
Query:  110 GKKITVLSXXXXXXXXXXXXXXLAFLESKLQELDGPS-ARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAIS 763
            G+ +TVLS              L FLE +LQ++D  + AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY +HGP IF   +   F             GPKYDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++   +   +A+++DIC ST+AAPTYFPPHY  T  S +G    F+LVDG VA   +P LL++S
Sbjct:   26 GEMVTVLSIDGGGIKGIIPGIILEFLEGQLQKMDNNADARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFQHGPHIFNSSTGQFF-------------GPKYDGKYLMQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLARSPELDAKMSDICYSTAAAPTYFPPHYFATNTS-NGDKYEFNLVDGAVATVADPALLSVS 231          
BLAST of CX043998 vs. ExPASy Swiss-Prot
Match: PATM3_SOLTU (Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.067e-45
Identity = 108/231 (46.75%), Postives = 141/231 (61.04%), Query Frame = 2
Query:   86 MATAGSAEGK---KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAIS 763
            +AT  S   K    +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FYLEHGP IF      N+  SI        +GP YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPHY  T  S +G    F+LVDGGVA   +P LL++S
Sbjct:   15 LATTSSTCAKLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYLEHGPHIF------NYSGSI--------IGPMYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHYFITHTS-NGDIYEFNLVDGGVATVGDPALLSLS 230          
BLAST of CX043998 vs. ExPASy Swiss-Prot
Match: PAT15_SOLTU (Patatin-15 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.067e-45
Identity = 107/231 (46.32%), Postives = 141/231 (61.04%), Query Frame = 2
Query:   86 MATAGSAEGK---KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAIS 763
            +AT  S   K    +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPH+  T  S +G T  F+LVDGGVA   +P LL++S
Sbjct:   15 LATTSSTCAKLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGGVATVGDPALLSLS 230          
BLAST of CX043998 vs. ExPASy Swiss-Prot
Match: PAT06_SOLTU (Patatin-06 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.067e-45
Identity = 107/231 (46.32%), Postives = 141/231 (61.04%), Query Frame = 2
Query:   86 MATAGSAEGK---KITVLSXXXXXXXXXXXXXXLAFLESKLQELDG-PSARIADYFDVVAGTSTGGLVTTMLTAPNKEGGPFSAAKDINNFYLEHGPKIFPQISRSNFLESIASSIDKLLLGPKYDGKYLRTLVNDLLGDVTVKETLTNVVIPTFDIKLLQPVIFSTTDGKENVLKNARLADICISTSAAPTYFPPHYLETKDSDSGGTRTFDLVDGGVA-ANNPTLLAIS 763
            +AT  S   K    +TVLS              L FLE +LQE+D    AR+ADYFDV+ GTSTGGL+T M+T PN+   PF+AAKDI  FY EHGP IF      N+  SI         GP+YDGKYL  ++ + LG+  V + LT V I +FDIK  +PVIF+ ++  ++   +A++ DIC ST+AAP YFPPH+  T  S +G T  F+LVDGGVA   +P LL++S
Sbjct:   15 LATTSSTCAKLEEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMITTPNENNRPFAAAKDIVPFYFEHGPHIF------NYSGSI--------FGPRYDGKYLLQVLQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPIYFPPHHFVTHTS-NGATYEFNLVDGGVATVGDPALLSLS 230          
The following BLAST results are available for this feature:
BLAST of CX043998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PT3K1_SOLTU3.275e-4647.95Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 ... [more]
PATT5_SOLTU3.275e-4648.64Patatin-T5 OS=Solanum tuberosum PE=1 SV=1[more]
PT2K4_SOLTU7.296e-4648.18Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 ... [more]
PAT0_SOLTU2.773e-4547.27Patatin OS=Solanum tuberosum PE=3 SV=1[more]
PAT07_SOLTU3.621e-4546.32Patatin-07 OS=Solanum tuberosum PE=2 SV=1[more]
PAT05_SOLTU4.729e-4545.91Patatin-05 OS=Solanum tuberosum GN=pat1-k1 PE=1 SV... [more]
PAT03_SOLTU6.177e-4545.91Patatin-03 OS=Solanum tuberosum PE=2 SV=1[more]
PATM3_SOLTU8.067e-4546.75Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1[more]
PAT15_SOLTU8.067e-4546.32Patatin-15 OS=Solanum tuberosum PE=2 SV=1[more]
PAT06_SOLTU8.067e-4546.32Patatin-06 OS=Solanum tuberosum PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14G05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G05-N10-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043998 ID=CX043998; Name=CX043998; organism=Citrus sinensis; type=EST; length=770bp
CTTAGCAGCAATAATTTCGAATTTAAAAGCTGCTCGATCTGATCGTTCTT
TTTAACTTCAAGAAGCTCTTTCAATTTGAAATAAAATGGCCACTGCCGGT
TCTGCAGAAGGAAAGAAAATAACAGTTCTGAGCATCGATGGAGGTGGCAT
TAGAGGCATTATTCCTGGCACTATTTTAGCCTTTCTTGAATCCAAGCTCC
AGGAATTGGATGGACCAAGTGCAAGAATTGCAGATTATTTTGATGTAGTA
GCAGGAACAAGCACCGGCGGATTGGTAACCACCATGCTTACGGCACCCAA
CAAGGAAGGCGGACCTTTCAGTGCTGCAAAGGATATCAATAATTTTTATC
TTGAGCATGGTCCTAAAATTTTCCCTCAAATTAGCCGCAGCAACTTCTTG
GAATCGATTGCAAGCTCTATCGATAAACTGCTGCTTGGACCAAAGTATGA
TGGGAAGTACCTGCGGACACTAGTGAACGATTTACTAGGAGACGTTACTG
TGAAAGAGACTCTTACCAACGTGGTTATACCAACTTTTGACATCAAGCTT
CTTCAACCAGTCATCTTCTCAACCACCGATGGAAAAGAGAACGTTTTGAA
GAATGCTCGGCTGGCTGATATATGCATCAGCACTTCTGCAGCGCCCACTT
ACTTCCCACCTCACTACTTGGAGACTAAGGACAGTGACAGTGGCGGAACC
CGCACTTTTGATCTTGTTGACGGTGGAGTTGCTGCTAATAATCCTACCCT
ATTGGCAATAAGCCACATAT
back to top