CX043978

Overview
NameCX043978
Unique NameCX043978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.443e-100
Identity = 167/236 (70.76%), Postives = 192/236 (81.36%), Query Frame = -1
Query:   94 LKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPY 801
            ++LTI DYPFANDGL LWDAIK+WVTDYV HYYPD+ L+ SDEELQ WW+E+R +GHGDKK EPWWPVLKT  DLI ++TTI WVTSGHHAAVNFGQY YGGYFPNRPTT R  + TEDP+DE  K F E PE  LL T+PSQ QAT VM  LD+LSTHSPDEEY+G++ E +W  +PVINAAFE+F+GKL  LEG+ID RN +  L+NR GAG+V YELLKP SE GVTG GVPY
Sbjct:  657 VRLTIPDYPFANDGLILWDAIKEWVTDYVKHYYPDEELITSDEELQGWWSEVRNIGHGDKKDEPWWPVLKTQDDLIGVVTTIAWVTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPY 892          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.553e-89
Identity = 147/235 (62.55%), Postives = 184/235 (78.30%), Query Frame = -1
Query:   97 LKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 801
            L+L I+DYP+A+DGL +W +IKQW +DYV+ YY     V  DEEL+AWW E+RT GH DKK EPWWPV  T ++L++I+T I+WVTSGHHAAVNFGQY Y GYFPNRPT  R NI  E+  D++ K F+ +PE  LL + PSQ+QA KVMA LD+LS+HSPDEEY+G+  EPAW  +P++ AAFEKF G+L E EG ID RN +P+ +NR GAG+VPYELLKPFSEPGVTG+G+P
Sbjct:  657 LELAIKDYPYADDGLLIWGSIKQWASDYVDFYYKSDGDVAGDEELRAWWEEVRTKGHADKKDEPWWPVCDTKENLVQILTIIMWVTSGHHAAVNFGQYHYAGYFPNRPTVVRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIP 891          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 6.091e-83
Identity = 143/236 (60.59%), Postives = 174/236 (73.73%), Query Frame = -1
Query:   97 LKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSD-EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 801
            LKL IEDYPFANDGL +WDAIK WV  YV  +YPD   V  DEELQA+WTE+RT GHGDKK  PWWP L +P+ L   +TTIVWV + HHAAVNFGQY +GGYFPNRP+ AR  +  E+P D    + FL+ P+ AL   FPSQ+QAT VMA+LDVLS+HS DEEYLG E    W  D  + AA++ F  +L E+EG+ID RN D KL+NR GAG++PY+L+KPFS+ GVTG G+P
Sbjct:  684 LKLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIP 919          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 1.039e-82
Identity = 143/236 (60.59%), Postives = 173/236 (73.31%), Query Frame = -1
Query:   97 LKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSD-EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 801
            L+L IEDYPFANDGL +WDAIK WV  YV  +YPD   V  DEELQA+WTE+RT GHGDKK  PWWP L +P+ L   +TTIVWV + HHAAVNFGQY +GGYFPNRP+ AR  +  E+P D    + FL+ P+ AL   FPSQ+QAT VMA+LDVLSTHS DEEYLG E    W  D  + AA+  F  +L E+EG+ID RN D KL+NR GAG++PY+L+KPFS+ GVTG G+P
Sbjct:  701 LRLAIEDYPFANDGLLIWDAIKTWVQAYVARFYPDADSVAGDEELQAFWTEVRTKGHGDKKDAPWWPKLDSPESLAHTLTTIVWVAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIP 936          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.607e-75
Identity = 133/223 (59.64%), Postives = 164/223 (73.54%), Query Frame = -1
Query:  133 LKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 801
            L+L IEDYP+ANDGL +WDAIKQW   YV HYYP  + +  DEELQAWWTE+RT GH DK+ EPWWP L + ++L + + TI+WVTSGHHAAVNFGQY   GY PNRPT AR N+ TE   D+  + F+E PE  LL+TFPSQ Q+  V+AILD+LSTHS DEEY+G   EPAW +D VIN AFE+F+    ++   +D  N DP  +NR+GAGMVPY LL+P
Sbjct:  688 LELAIEDYPYANDGLLVWDAIKQWALTYVQHYYPCAADIVDDEELQAWWTEVRTKGHADKQDEPWWPELDSHENLAQTLATIMWVTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDDM-RDFVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRP 909          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.723e-70
Identity = 124/237 (52.32%), Postives = 164/237 (69.20%), Query Frame = -1
Query:   97 LKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYL--GKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 801
            ++L I+DYP+A DGL +W AIK  V  YV H+Y D   + SD ELQAWW EI+  GH DKK EPWWP L T +DL +I+T ++W+ SG HAA+NFGQY +GGY PNRPT  R  I  E  +D  ++ F+  P+ + L + P+Q+QATKVMA+ + LSTHSPDEEYL   +E++  W +D  +   F KF  +L+++E  I+ RN D KL+NR GAGM PYELL P S  GVTG+G+P
Sbjct:  678 VRLVIDDYPYAADGLLIWKAIKDLVESYVKHFYSDSKSITSDLELQAWWDEIKNKGHYDKKDEPWWPKLNTTQDLSQILTNMIWIASGQHAAINFGQYPFGGYVPNRPTLLRKLIPQE--TDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIP 912          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 8.539e-69
Identity = 124/236 (52.54%), Postives = 161/236 (68.22%), Query Frame = -1
Query:   97 LKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 801
            LKL +EDYP+ANDGL LW AI+ WV  YV  YY + +L+++D ELQAW++E   VGH D +   WWP L T +DL+ +ITTI+W+ S  HAA+NFGQY YGGY PNRP   R  I   D SD ++  F+E P+    ++ PS +Q TK MA++D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  ID RN DP  RNR GAG++PYEL+ P SEPGVT +GVP
Sbjct:  688 LKLLVEDYPYANDGLLLWSAIQTWVRTYVERYYANSNLIQTDTELQAWYSESINVGHADHRDAEWWPKLSTVEDLVSVITTIIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLI--PDESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVP 921          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.229e-68
Identity = 124/236 (52.54%), Postives = 160/236 (67.80%), Query Frame = -1
Query:   97 LKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 801
            LKL IEDYP+ANDGL LW AI+ WV  YV  YYP+ +L+++D ELQ+W++E   VGH D +   WWP L T  DL+ I+TT++W+ S  HAA+NFGQY YGGY PNRP   R  I   D SD ++  F+  PE    ++ PS  Q +K MA++D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  I+ RNADP  RNR GAG++PYELL P SEPGVT +GVP
Sbjct:  681 LKLLIEDYPYANDGLLLWSAIQTWVRTYVERYYPNPNLIKTDSELQSWYSESINVGHADLRDADWWPELSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLMRRLI--PDESDPEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVP 914          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.441e-68
Identity = 121/234 (51.71%), Postives = 158/234 (67.52%), Query Frame = -1
Query:  100 LKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGV 801
            L+L IEDYP+ANDGL +WDAIKQW +DYV HYYP    +  DEELQ WWTE+RT GH DK+ EPWWP L   + L++++ TI+WVTS HHAAVNFGQY   GY PN P+ AR N+  E    E+   F   PE   L+T PSQ+Q   VMA LD+LS+H+ DEEY+G   EPAW+ D  ++ AF+ F+ K+ ++   ++  N D   RNR+GAG+VPY LL+P +   +  K V
Sbjct:  689 LELAIEDYPYANDGLLVWDAIKQWASDYVAHYYPCAVDIVDDEELQDWWTEVRTKGHPDKQDEPWWPELDCHESLVQVLATIMWVTSAHHAAVNFGQYPMAGYVPNHPSIARRNMPCE-MGPEEMLAFKAAPEKVWLDTLPSQLQTVMVMATLDLLSSHASDEEYMGTHQEPAWQRDGEVDKAFQVFQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRPLNGNPMDAKTV 921          
BLAST of CX043978 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.667e-64
Identity = 115/235 (48.94%), Postives = 156/235 (66.38%), Query Frame = -1
Query:   97 LKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 801
            ++L IEDYP+A DGL++W AIK WVTDY + YY     +  D ELQAWW E+R VGHGDKK+EPWWP ++TP++LI+  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P   +++     P+ A L T  +Q+Q    ++++++LS H+ DE YLG+   P W +D    AAF++F  KL ++E  I  RN D  L NR+G    PY LL P SE G+TGKG+P
Sbjct:  624 VRLLIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFM--PEPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIP 856          
The following BLAST results are available for this feature:
BLAST of CX043978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX2_ARATH1.443e-10070.76Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU2.553e-8962.55Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC1_ORYSJ6.091e-8360.59Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOXC2_ORYSJ1.039e-8260.59Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX21_HORVU1.607e-7559.64Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX6_ARATH7.723e-7052.32Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_ARATH8.539e-6952.54Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH7.229e-6852.54Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX22_HORVU9.441e-6851.71Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX1_SOLTU1.667e-6448.94Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14F05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14F05-L10-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043978 ID=CX043978; Name=CX043978; organism=Citrus sinensis; type=EST; length=801bp
ATTTGATTCATTCTTGAACTCATTCTCAAAAGTTTTTATTGATACAACAT
TCGAGCGATTGCAACAACATTTTCAACTCTAGATAGAGATGCTGTACGGA
ACTCCTTTTCCTGTAACACCAGGTTCCGAAAATGGCTTCAAGAGCTCATA
TGGCACCATCCCAGCTCCATTTCTATTCCTCAACTTGGGATCTGCATTCC
TTGCATCAATAATCCCTTCAAGCTCCATTAACTTGCCTCTAAACTTTTCA
AATGCTGCATTTATAACCGGATCCTCACGCCATGCTGGCTCTATTTCTTT
TCCTAAATACTCCTCATCAGGAGAATGAGTCGATAAAACATCAAGAATAG
CCATAACTTTAGTAGCTTGAATCTGGGAAGGGAAGGTATTCAAAAGTGCA
TTTTCAGGTTTTTCAAGGAAGAATTTCCATTGTTCATCAGATGGATCTTC
AGTGGCAATGTTGCATCTTGCAGTGGTTGGCCTATTGGGGAAATAGCCTC
CGTAAGTGTATTGGCCGAAGTTAACAGCTGCGTGGTGACCAGATGTTACC
CAAACAATAGTTGTGATGATTTCAATTAAATCCTTAGGGGTTTTCAAGAC
AGGCCACCAAGGTTCATGTTTCTTGTCACCGTGTCCCACAGTTCGAATTT
CAGTCCACCAAGCTTGGAGCTCTTCATCAGATTCTACAAGGCTTTTATCA
GGGTAGTAGTGATTAACATAATCGGTAACCCATTGTTTTATGGCATCCCA
GAGATCAAGGCCATCATTGGCAAAAGGATAGTCTTCAATTGTTAGCTTCA
A
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