CX043963

Overview
NameCX043963
Unique NameCX043963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.291e-36
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            VLLDVKPWDDETDMKKLEEAVRSV+M G  WGASKLVPVGYGIKKLQIM+TIVDDLV VDSLIEE L  EP NE++QSCDIVAFNKI
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.666e-36
Identity = 70/87 (80.46%), Postives = 78/87 (89.66%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            VL+D+KPWDDETDMKKLEEAVRS++M G FWGASKLVPVGYGIKKL IM TIVDDLV +D++IEE L  EP NEY+QSCDIVAFNKI
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.666e-36
Identity = 74/87 (85.06%), Postives = 78/87 (89.66%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            VL+DVKPWDDETDMKKLEEAVR VEMPG FWGASKLVPVGYGIKKL IM TIVDDLV  D+LIE+ L +EP NEYIQSCDIVAFNKI
Sbjct:  138 VLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.706e-36
Identity = 69/87 (79.31%), Postives = 79/87 (90.80%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            VL+D+KPWDDETDMKKLEEAV+S++M G FWGASKLVPVGYGIKKLQI+ TIVDDLV +D++IEE L  EP NEY+QSCDIVAFNKI
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.643e-35
Identity = 72/87 (82.76%), Postives = 77/87 (88.51%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            VLLDVKPWDDETDM KLEEAVRS++M G  WGASKLV VGYGIKKLQIM+TIVDDLV VD L+E+ L AEP NEYIQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.643e-35
Identity = 73/87 (83.91%), Postives = 77/87 (88.51%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            VLLDVKPWDDETDM KLEEAVR+V+M G  WGASKLVPVGYGIKKLQIM+TIVDDLV VDSLIE+    EP NEYIQSCDIVAFNKI
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.626e-35
Identity = 73/87 (83.91%), Postives = 79/87 (90.80%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            VLL+VKPWDDETDMKKLEEAVRSV+MPG  WGASKLVPVGYGIKKL IM+TIVDDLV VD+LIE+ L +EP NEYIQS DIVAFNKI
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.642e-34
Identity = 72/87 (82.76%), Postives = 77/87 (88.51%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            VLLDVKPWDDETDM KLEEAVR+V+M G  WGASKLVPVGYGIKKLQIM+TIVDDLV VDSLIE+    EP NE+IQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.096e-33
Identity = 71/87 (81.61%), Postives = 76/87 (87.36%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            VLLDVKPWDDETDMKKLEEAVRSV+  G   GASKLVPVGYGIKKL IM+TIVDDLV VD+LIE+ L  EP NEY+QSCDIVAFNKI
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231
[Close]
BLAST of CX043963 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.944e-31
Identity = 66/87 (75.86%), Postives = 74/87 (85.06%), Query Frame = -2 
Query:  180 VLLDVKPWDDETDMKKLEEAVRSVEMPGFFWGASKLVPVGYGIKKLQIMITIVDDLVFVDSLIEEPLPAEPCNEYIQSCDIVAFNKI 440
            VL+D+KPWDDETDMKKLEEAVRSV+M G  WGASKL+PVGYGIKKLQIM+TI+DDL    + IEE L   P NEY+QSCDIVAFNKI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDL--ASTPIEEVLCEAPINEYVQSCDIVAFNKI 216
The following BLAST results are available for this feature:
BLAST of CX043963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_ORYSJ2.291e-3686.21Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D2_ARATH6.666e-3680.46Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1B2_ARATH6.666e-3685.06Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1D1_ARATH8.706e-3679.31Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D_PIMBR5.643e-3582.76Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D1_ORYSJ5.643e-3583.91Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1B1_ARATH9.626e-3583.91Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D2_ORYSJ1.642e-3482.76Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_BETVU3.096e-3381.61Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_WHEAT4.944e-3175.86Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E08-J16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043963 ID=CX043963; Name=CX043963; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTTTCAAGGAAATTTGAAAGATCATCTCGTCATTTCT
TCTCAATTTAGCAACGGAAAATGCAGGCCAAGCAAAACCATTAAAAAGCA
AAACACAATTAAAACGACAAAAACTAAATTGCAGCCAAAAATGGCTGCAC
TATAAGGCAAAACAATGAGAGGATTCTTAAATTTTATTGAAGGCGACAAT
GTCGCAGCTCTGAATATACTCATTGCAGGGCTCAGCTGGGAGGGGTTCCT
CTATCAGTGAATCCACAAAAACAAGATCGTCAACGATTGTAATCATGATT
TGCAGCTTCTTAATCCCATAACCGACTGGGACCAATTTTGATGCTCCCCA
AAAGAAACCCGGCATCTCAACACTCCTAACTGCCTCTTCTAGCTTTTTCA
TGTCTGTCTCGTCATCCCAAGGCTTTACATCCAAAAGTACCGATGATTTT
CCACTCTCTTTCTTCTTGGATGATTGCTTTTTAGCAGCCTCCCTCTCCTC
TGCTGCTTTCTTATCCTCCTCAGTCTCATCTCCAAAGAAATCCAAATCAT
CATCATCACCACCTCCAGCAGCAGCAGGCTTGGCTGCGGCGGCGTCAACT
GGAGCACCTTTGCCATCAACTCTCACACCAACGGCTTTGCCAGGGAAACT
TGGG
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