CX043962

Overview
NameCX043962
Unique NameCX043962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.057e-66
Identity = 132/224 (58.93%), Postives = 153/224 (68.30%), Query Frame = 3
Query:   54 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            MA+TFSDLHTE G+KS++++L+GK+YISG+QL+ DD+KVYAAV VKP+D+FPNAS WY+SV+S+LA SFPGKAVGV+                                                            VL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKKL IM TIVDDLVS D+LIE+ LT+EP NEYIQSCDIVAFNKI
Sbjct:    1 MAVTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVASQLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 4.881e-64
Identity = 129/224 (57.59%), Postives = 147/224 (65.62%), Query Frame = 3
Query:   54 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            MA+TF+DLHT  GLK+L+Q+LSGK+Y+SGN ++KDDIKV+AAV  KP   FPNA+ WYD+V++ LA  FPGKAVGV                                                             VLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIEEHLT EP NE++QSCDIVAFNKI
Sbjct:    1 MAVTFTDLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.025e-37
Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKKL IM TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.338e-37
Identity = 72/87 (82.76%), Postives = 82/87 (94.25%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKKLQI+ TIVDDLVS+D++IEE LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.338e-37
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE+HLT+EP NEYIQS DIVAFNKI
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          

HSP 2 Score: 120.168 bits (300), Expect = 1.388e-26
Identity = 56/77 (72.73%), Postives = 67/77 (87.01%), Query Frame = 3
Query:   54 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVR 284
            MA+TFSDLHTE GLK+L+++L+GK+YISG+QL+ DD+KVYAAVL  P D FPNAS WYDSV+S LA SFPGKA GVR
Sbjct:    1 MAVTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVR 77          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.982e-37
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKKLQIM+TIVDDLVSVD L+E++LTAEP NEYIQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          

HSP 2 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3
Query:   54 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRL 248
            MA+TF DL +E+GL+ LD+YL  +SYISG Q +KDD+ V+AA+   P+  + N S WY+ V + L
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALL 65          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.133e-36
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NEYIQSCDIVAFNKI
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.297e-36
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE++   EP NE+IQSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          

HSP 2 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   54 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPS 257
            MAIT S++++E+GL+ LD+YL  +SYISG Q +KDD+ V+ ++   PA S+ N + WYD +S+ L  S
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSS 68          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.636e-35
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLVPVGYGIKKL IM+TIVDDLVSVD+LIE++LT EP NEY+QSCDIVAFNKI
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CX043962 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.926e-32
Identity = 68/87 (78.16%), Postives = 75/87 (86.21%), Query Frame = 3
Query:  465 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITIVDDLVSVDSLIEEHLTAEPCNEYIQSCDIVAFNKI 725
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKKLQIM+TI+DDL S    IEE L   P NEY+QSCDIVAFNKI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQSCDIVAFNKI 216          

HSP 2 Score: 102.449 bits (254), Expect = 2.996e-21
Identity = 45/76 (59.21%), Postives = 64/76 (84.21%), Query Frame = 3
Query:   54 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGV 281
            MA+TFSDLHT  GLK+L+ +L+GK+YISG+ +TKDD+KV+AAV +KP+  FPNA+ WYD+V++ ++  FPG+A GV
Sbjct:    1 MAVTFSDLHTADGLKALEAHLAGKTYISGDGITKDDVKVFAAVPLKPSAEFPNAARWYDTVAAAVSSRFPGQASGV 76          
The following BLAST results are available for this feature:
BLAST of CX043962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B2_ARATH3.057e-6658.93Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ4.881e-6457.59Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D2_ARATH1.025e-3783.91Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH1.338e-3782.76Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1B1_ARATH1.338e-3788.51Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D_PIMBR2.982e-3786.21Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D1_ORYSJ1.133e-3686.21Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ3.297e-3685.06Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_BETVU1.636e-3585.06Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_WHEAT4.926e-3278.16Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E08-J16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043962 ID=CX043962; Name=CX043962; organism=Citrus sinensis; type=EST; length=808bp
GCCCCCCCTCGTGCCGCGTCTCTTCTTGCCTCTGCCTTGATTTGAAGACC
AAAATGGCCATCACTTTTTCGGATCTCCACACAGAGTCAGGCCTTAAGTC
TCTCGATCAGTATCTTTCTGGGAAATCTTATATCTCCGGTAATCAACTGA
CAAAAGATGACATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGAT
TCTTTCCCCAACGCCAGCAGCTGGTACGACAGCGTTTCTTCACGTCTCGC
CCCAAGCTTCCCTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTG
CTCCAGTTGACGCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGAT
GATGATGATTTGGATCTCTTTGGAGATGAGACTGAGGAGGATAAGAAAGC
AGCAGAGGAGAGGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGA
GTGGAAAATCATCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAGACA
GACATGAAAAAGCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCT
CTTTTGGGGAGCATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGC
TGCAAATCATGATTACAATCGTTGACGATCTTGTTTCTGTGGATTCACTG
ATAGAGGAACACCTCACAGCTGAGCCCTGCAATGAGTATATTCAGAGCTG
CGACATCGTCGCCTTCAATAAAATTTAAGAATCCTCTCATTGTTTTGCCT
TATAGTGCAGCCATTTTTGGCTGCAATTTAGTTTTTGTCGTTTTAATTGT
GTTCTGCT
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