CX043955

Overview
NameCX043955
Unique NameCX043955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043955 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.818e-51
Identity = 114/174 (65.52%), Postives = 135/174 (77.59%), Query Frame = -2
Query:  211 VADDKTVIPS---PPAEDK--PEESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 714
            VAD+K ++     PPAE+K  P++SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AENKA KK+S+I +WENS+KA +                EY EKMKNK+AL+HKEAEEKRAMIEAKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct:   29 VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198          
BLAST of CX043955 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.693e-43
Identity = 96/170 (56.47%), Postives = 117/170 (68.82%), Query Frame = -2
Query:  211 KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 720
            KDVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EKR+S +RAWEESEKS+AENKA KK++ + +WENS+KAAV                EY E+MKNK+A IHKEAEE+RAMIEAKRGED+LKAEE AAKYRATG  PK    CF
Sbjct:   47 KDVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212          
BLAST of CX043955 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.664e-42
Identity = 94/169 (55.62%), Postives = 118/169 (69.82%), Query Frame = -2
Query:  211 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXEYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 717
            +VAD+K  I +PP    P ESKALAVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN+A KK+S + +WENS+KAAV                +Y EKMKNK+A IHK AEEKRAM+EAK+GE+LLKAEE+ AKYRATG  PK    CF
Sbjct:   30 EVADEK--IHNPP----PVESKALAVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190          
The following BLAST results are available for this feature:
BLAST of CX043955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU7.818e-5165.52Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH2.693e-4356.47Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH8.664e-4255.62Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14E04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E04-J8-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043955 ID=CX043955; Name=CX043955; organism=Citrus sinensis; type=EST; length=790bp
TTCTTATTACGTTATGATTCAACATTATTTCAAACTTTTGCATACAAATT
GTATATACGCACAAATACATCAATATGCACGCACAATAATGAACATTTTT
CCAATTCTTCATAATGAATTCAAACACAAACACTAAATAAACAAATGAAT
GCTCAAAGGAAATATACATAGAATTAAATTTATCAAACAAGCTTGAGAAT
TTTAACTTCCAAAACAACTAAGGAGCTTCTTGGGGGCAGAGCCCGTCGCT
CGATACTTGGCAGCCAGCTCCTCTGCCTTGAGAAGGTCTTCCCCTCTCTT
AGCTTCAATCATTGCCCTCTTTTCTTCTGCTTCCTTGTGGATTAGTGCCA
TCTTGTTTTTCATTTTCTCTACATACTCAGCCTTCTTCTTCTCCAATTGT
TCCTCAATCTTTTTTAGCTCAGCTTCCACAGCTGCTTTCCGGCTGTTCTC
CCATGAAACAATGGAAGATAGCTTTTTATGAGCTTTGTTCTCTGCTTGCG
ACTTCTCACTTTCTTCCCATGCTCTAATCAGCGAAATCCTCTTCTCCGTT
TCAACTCTTGCAAGCACCGCATCTCTGTTTACAGAGCCCTCTGTACTTTT
TTCACCAGCAGGAGGTTCAGCCTCAGGAGCCTTATCAACAACAGCAAGGG
CTTTGGATTCCTCAGGCTTATCCTCAGCAGGTGGAGATGGAATTACGGTC
TTGTCATCGGCAACATCTTTAGGAGGCTCAGCTGCTGCCGGAGCGGCTGG
TTCTGTAGAAGGAGGAGGCGGCGGCTCGGTCGGGGTTTCA
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