CX043954

Overview
NameCX043954
Unique NameCX043954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043954 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.030e-51
Identity = 113/174 (64.94%), Postives = 134/174 (77.01%), Query Frame = 1
Query:   85 VADDKTVIPS---PPAEDK--PEESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 588
            VAD+K ++     PPAE+K  P++SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AENKA KK+S+I +WENS+KA +                 Y EKMKNK+AL+HKEAEEKRAMIEAKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct:   29 VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198          
BLAST of CX043954 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.766e-43
Identity = 95/170 (55.88%), Postives = 116/170 (68.24%), Query Frame = 1
Query:   79 KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 588
            KDVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EKR+S +RAWEESEKS+AENKA KK++ + +WENS+KAAV                 Y E+MKNK+A IHKEAEE+RAMIEAKRGED+LKAEE AAKYRATG  PK    CF
Sbjct:   47 KDVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212          
BLAST of CX043954 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.898e-42
Identity = 94/169 (55.62%), Postives = 117/169 (69.23%), Query Frame = 1
Query:   82 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSCF 588
            +VAD+K  I +PP    P ESKALAVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN+A KK+S + +WENS+KAAV                 Y EKMKNK+A IHK AEEKRAM+EAK+GE+LLKAEE+ AKYRATG  PK    CF
Sbjct:   30 EVADEK--IHNPP----PVESKALAVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190          
The following BLAST results are available for this feature:
BLAST of CX043954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU8.030e-5164.94Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH2.766e-4355.88Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH8.898e-4255.62Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14E04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E04-J8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043954 ID=CX043954; Name=CX043954; organism=Citrus sinensis; type=EST; length=801bp
CTTGAAACTGAAACCCCGACCGAGCCGCCGCCTCCTCCTTCTACAGAACC
AGCCGCTCCGGCAGCAGCTGAGCCTCCTAAAGATGTTGCCGATGACAAGA
CCGTAATTCCATCTCCACCTGCTGAGGATAAGCCTGAGGAATCCAAAGCC
CTTGCTGTTGTTGATAAGGCTCCTGAGGCTGAACCTCCTGCTGGTGAAAA
AAGTACAGAGGGCTCTGTAAACAGAGATGCGGTGCTTGCAAGAGTTGAAA
CGGAGAAGAGGATTTCGCTGATTAGAGCATGGGAAGAAAGTGAGAAGTCG
CAAGCAGAGAACAAAGCTCATAAAAAGCTATCTTCCATTGTTTCATGGGA
GAACAGCCGGAAAGCAGCTGTGGAAGCTGAGCTAAAAAAGATTGAGGAAC
AATTGGAGAAGAAGAAGGCTGAGTATGTAGAGAAAATGAAAAACAAGATG
GCACTAATCCACAAGGAAGCAGAAGAAAAGAGGGCAATGATTGAAGCTAA
GAGAGGGGAAGACCTTCTCAAGGCAGAGGAGCTGGCTGCCAAGTATCGAG
CGACGGGCTCTGCCCCCAAGAAGCTCCTTAGTTGTTTTGGAAGTTAAAAT
TCTCAAGCTTGTTTGATAAATTTAATTCTATGTATATTTCCTTTGAGCAT
TCATTTGTTTATTTAGTGTTTGTGTTTGAATTCATTATGAAGAATTGGAA
AAATGTTCATTATTGTGCGTGCATATTGATGTATTTGTGCGTATATACAA
TTTGTATGCAAAAGTTTGAAATAATGTTGAATCATAACGTAATAAGAACC
T
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