CX043948

Overview
NameCX043948
Unique NameCX043948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.103e-62
Identity = 116/206 (56.31%), Postives = 152/206 (73.79%), Query Frame = -3
Query:  272 LARSVNIRFTFRGVAASRLEDVKPWMLQVSPKE--ALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFS-AEGYSVEETEGCLTLGWHSRPLIAASAW 880
            LA ++++ F +RG  A+ L D+   ML++ P E  ++AVNS+ +LHKLLG    R   ++ VLG +  + P+I TVVEQESNHN P FLDRFT +L+YYST+FDSLE  P   +K ++E+YL ++ICNVV C+G  RVERHE L++WRNR   AGF   H+GSNAF+QASMLL LF+  EGY VEE++GCL LGWH+RPLIA SAW
Sbjct:  327 LAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKLLG----RPGAIDKVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEGVPSGQDKVMSEVYLGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSAW 528          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.292e-62
Identity = 116/207 (56.04%), Postives = 150/207 (72.46%), Query Frame = -3
Query:  272 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKE--ALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFS-AEGYSVEETEGCLTLGWHSRPLIAASAW 883
            +LA ++++ F +RG  A+ L D+   ML++ P E  A+AVNS+ +LHKLLG    R   +E VLG ++ + P I TVVEQES+HN P FLDRFT +L+YYST+FDSLE  P   +K ++E+YL ++ICN+V CEG  RVERHE L++W NR   +GF P HLGSNAF+QASMLL LF+  EGY VEE  GCL LGWH+RPLI  SAW
Sbjct:  371 QLAEAIHVEFEYRGFVANSLADLDASMLELRPSEIEAVAVNSVFELHKLLG----RTGGIEKVLGVVKQIKPVIFTVVEQESSHNGPVFLDRFTESLHYYSTLFDSLEGVPSSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWANRFGSSGFAPAHLGSNAFKQASMLLALFNGGEGYRVEENNGCLMLGWHTRPLITTSAW 573          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.627e-61
Identity = 115/207 (55.56%), Postives = 151/207 (72.95%), Query Frame = -3
Query:  272 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPK--EALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLF-SAEGYSVEETEGCLTLGWHSRPLIAASAW 883
            +LA ++++ F +RG  A+ L D+   ML++ P   EA+AVNS+ +LHKLLG    R   +E VLG ++ + P I TVVEQESNHN P FLDRFT +L+YYST+FDSLE  P   +K ++E+YL ++ICN+V CEG  RVERHE L++W NR   +G  P HLGSNAF+QASMLL++F S +GY VEE+ GCL LGWH+RPLI  SAW
Sbjct:  378 QLAEAIHVEFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVFELHKLLG----RPGGIEKVLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGVPNSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAW 580          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.430e-61
Identity = 115/207 (55.56%), Postives = 151/207 (72.95%), Query Frame = -3
Query:  272 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKE--ALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLF-SAEGYSVEETEGCLTLGWHSRPLIAASAW 883
            +L  ++N+ F +RG  A+ L D+   ML++ P E  ++ VNS+ +LHKLL    AR   +E V+  ++ + P+IMTVVEQE+NHN P F+DRFT +L+YYST+FDSLE+ P   +K ++E+YL ++ICNVV CEGS RVE HE L +WR RL  +GF P+HLGSNAF+QASMLL LF S EGY VEE  G LTLGWH+RPLI  SAW
Sbjct:  374 KLVETINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLL----ARPGAIEKVMSVVKQMKPEIMTVVEQEANHNGPVFMDRFTESLHYYSTLFDSLESSPNNQDKMMSEMYLGKQICNVVACEGSDRVEWHETLTQWRTRLCSSGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLTLGWHTRPLIVTSAW 576          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.851e-61
Identity = 115/209 (55.02%), Postives = 154/209 (73.68%), Query Frame = -3
Query:  272 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKEALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQP----EKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFS-AEGYSVEETEGCLTLGWHSRPLIAASAW 883
            +LA ++++ F +RG  A+ L D+   ML++   E++AVNS+ +LH LL    AR   +E VL  ++++ P I+T+VEQE+NHN P FLDRFT +L+YYST+FDSLE C + P    +K ++E+YL ++ICNVV CEG  RVERHE LA+WR RL  AGF P++LGSNAF+QASMLL LF+  +GY VEE  GCL LGWH+RPLIA SAW
Sbjct:  370 QLAETIHVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSLL----ARPGGIERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLMSEVYLGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAW 574          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.642e-61
Identity = 114/207 (55.07%), Postives = 147/207 (71.01%), Query Frame = -3
Query:  272 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKE--ALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFS-AEGYSVEETEGCLTLGWHSRPLIAASAW 883
            +LA ++++ F +RG  A+ L D+   ML++ P E  A+AVNS+ +LHKLLG    R   +E V G ++ + P I TVVEQESNHN P FLDRFT +L+YYST+FDSLE  P   +K ++E+YL ++ICN+V CEG  RVERHE L++W NR   +GF P HLGSNAF+QAS LL LF+  EGY VEE  GCL L WH+RPLI  SAW
Sbjct:  365 QLAEAIHVEFEYRGFVANSLADLDASMLELRPSETEAVAVNSVFELHKLLG----RTGGIEKVFGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGAPSSQDKVMSEVYLGKQICNLVACEGPDRVERHETLSQWSNRFGSSGFAPAHLGSNAFKQASTLLALFNGGEGYRVEENNGCLMLSWHTRPLITTSAW 567          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.953e-60
Identity = 114/217 (52.53%), Postives = 158/217 (72.81%), Query Frame = -3
Query:  242 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKE--ALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEACPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLF-SAEGYSVEETEGCLTLGWHSRPLIAASAWHAVPDVMMSH 883
            + A ++++ F +RG  A+ L D+   ML++ P E  ++ VNS+ +LH+LL    AR   +E VL  ++ + P+I+TVVEQE+NHN P F++RFT +L+YYST+FDSLE  P   +K ++E+YL ++ICNVV CEG+ RVERHE L +WR RL+ AGF P+HLGSNAF+QAS+LL LF S EGY VEE EG L LGWH+RPLIA SAW    + +++H
Sbjct:  367 KFAETLHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHQLL----ARPGAIEKVLSVVKQMKPEIVTVVEQEANHNGPVFVERFTESLHYYSTLFDSLECSPNSQDKMMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLSSAGFDPIHLGSNAFKQASILLALFGSGEGYRVEENEGSLMLGWHTRPLIATSAWKPGNNPVVAH 579          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.477e-59
Identity = 119/215 (55.35%), Postives = 151/215 (70.23%), Query Frame = -3
Query:  269 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKE--ALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEA---CPLQPEKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLF-SAEGYSVEETEGCLTLGWHSRPLIA----ASAWH 883
            +LA  + I F FRG  A+ L D++P ML + P E   +AVN++ +LH LL    AR   +E V+  I+ + PKI+TVVEQE+NHN P FLDRFT AL+YYST+FDSLE     P   + A++E+YL R+ICNVV CEG  RVERHEPL +WR R+  AG  P+HLGSNA++QASMLL LF S +GY VEE  GCL LGWH+RPLIA    A+ W+
Sbjct:  327 QLAERIGIEFEFRGFVANSLADLEPEMLDIRPPEIEVVAVNAVFELHPLL----ARPGGIEKVVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLEGSGVAPASQDLAMSELYLGRQICNVVACEGMDRVERHEPLTQWRTRMETAGVSPVHLGSNAYKQASMLLALFASGDGYRVEENNGCLMLGWHTRPLIAHLGLATRWY 537          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.153e-59
Identity = 117/226 (51.77%), Postives = 155/226 (68.58%), Query Frame = -3
Query:  272 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPK-------EALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEA-----CPLQP---------EKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFS-AEGYSVEETEGCLTLGWHSRPLIAASAW 883
            + A ++ + F +RG+ A+ L D++P+MLQ   +       E +AVNS+ +LH+LL    A+   +E VLG +  + P+I+TVVEQE+NHN   FLDRFT +L+YYSTMFDSLE        L P         ++ ++E+YL R+ICNVV CEG+ R ERHE L +WRNRL  AGF P+HLGSNA++QAS LL LF+  +GY VEE EGCLTLGWH+RPLIA SAW
Sbjct:  399 QFAHTIRVDFQYRGLVAATLADLEPFMLQPEGEADANEEPEVIAVNSVFELHRLL----AQPGALEKVLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGSSGQAELSPPAAGGGGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAGGDGYRVEEKEGCLTLGWHTRPLIATSAW 620          
BLAST of CX043948 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.342e-59
Identity = 118/228 (51.75%), Postives = 156/228 (68.42%), Query Frame = -3
Query:  257 ELARSVNIRFTFRGVAASRLEDVKPWMLQVSPKE--ALAVNSILQLHKLLGSDPARNSPMEMVLGWIRNLNPKIMTVVEQESNHNQPEFLDRFTTALYYYSTMFDSLEAC------------PLQP----EKALAEIYLQREICNVVCCEGSARVERHEPLAKWRNRLAGAGFRPLHLGSNAFRQASMLLTLFS-AEGYSVEETEGCLTLGWHSRPLIAASAWHAVPD 883
            +LA ++ + F FRG  A+ L D+   +L + P E  A+A+NS+ +LH+LL    +R   +E VL  I+ +NPKI+T+VEQE+NHN   F+DRF  AL+YYSTMFDSLE+             P  P    +  ++E+YL R+ICNVV CEGS RVERHE L +WR R+  +GF P+HLGSNAF+QASMLL LF+  +GY VEE +GCL LGWH+RPLIA SAW  +PD
Sbjct:  355 QLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVFELHRLL----SRPGAIEKVLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSGSSSSASPTGILPQPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAWKLLPD 578          
The following BLAST results are available for this feature:
BLAST of CX043948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
GAI_ARATH3.103e-6256.31DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
RGA2_BRACM5.292e-6256.04DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
RGA_ARATH2.627e-6155.56DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]
GAIPB_CUCMA3.430e-6155.56DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
GAI1_VITVI5.851e-6155.02DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
RGA1_BRACM7.642e-6155.07DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
GAIP_CUCMA4.953e-6052.53DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
GAI_GOSHI5.477e-5955.35DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
SLR1_ORYSJ7.153e-5951.77DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
GAI_SOLLC9.342e-5951.75DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E01-J2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043948 ID=CX043948; Name=CX043948; organism=Citrus sinensis; type=EST; length=885bp
CTTTTTTTTTAAATGTGGCAATTTTTCGGATGGGCATGAGCTGTCAATTT
CAAGGTTAAACACAGTTGCATGAACAGGTAATAAAGCACCAGTGCAGAAT
AGTAACTACACATTACACAAATTGATCTCCTGATTCCCTAAAAAGGGAAA
TATCTCATTCAAAACCCAGAAACACAACCAGCCAGCTACTGCCCTTCTTC
TTTTTCTTTTTTACAGCAGATGATAATTAATTACTATTCTGATGACTCAT
CATTACATCTGGCACGGCATGCCAAGCCGAAGCCGCTATGAGAGGCCGGC
TGTGCCAGCCGAGAGTCAAACACCCTTCGGTTTCCTCAACAGAGTAACCC
TCGGCCGAAAAGAGAGTCAAGAGCATACTAGCTTGTCTGAAAGCATTAGA
CCCAAGATGTAAAGGCCTAAAGCCGGCACCTGCGAGCCGATTCCTCCATT
TAGCCAGCGGCTCGTGCCTTTCAACTCGAGCCGACCCTTCACAACACACC
ACGTTACAAATCTCTCTTTGTAAGTAAATCTCGGCTAAGGCCTTTTCCGG
CTGAAGCGGACAGGCCTCGAGCGAGTCAAACATGGTTGAATAATAGTACA
AAGCCGTCGTGAACCGGTCCAAGAACTCTGGCTGGTTGTGATTCGATTCT
TGCTCGACAACCGTCATGATTTTCGGGTTCAGGTTCCGAATCCAACCCAG
CACCATTTCCATAGGCGAATTCCGGGCCGGGTCTGACCCGAGCAATTTGT
GCAGTTGCAAGATTGAGTTTACGGCCAAGGCTTCCTTCGGGCTGACCTGG
AGCATCCACGGCTTCACATCCTCGAGCCTGGAAGCCGCCACGCCACGAAA
GGTGAACCTGATGTTGACGGAGCGCGCCAACTCGG
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