CX043946

Overview
NameCX043946
Unique NameCX043946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043946 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.612e-55
Identity = 93/139 (66.91%), Postives = 121/139 (87.05%), Query Frame = -2
Query:  422 FVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAW-YHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 835
            F+++IVNGS+NAPFF++RF+EA++H+S+LFDMFD+T+PR++ ER+ FERE YGREAMNVIACE  +RVERPETY+QWQ R +RAGFKQ  +  EL+E   GKLK W YHKDFV+D+++ W+LQGWKGR ++ASSCWVPA
Sbjct:  492 FIHAIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFKQKTIKPELVELFRGKLKKWRYHKDFVVDENSKWLLQGWKGRTLYASSCWVPA 630          
BLAST of CX043946 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 8.000e-55
Identity = 94/139 (67.63%), Postives = 118/139 (84.89%), Query Frame = -2
Query:  422 FVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAW-YHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 835
            F++S VNGS+NAPFF TRF+EA+FH+S+LFD+F  T+ +E+PER+ FE E YGRE MNVIACEG++RVERPETYKQWQ R IRAGFKQ P+  EL++    K+K W YHKDFV+D+D+NW LQGWKGRI+F+SSCWVP+
Sbjct:  524 FLSSTVNGSFNAPFFTTRFKEALFHYSALFDLFGATLSKENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMIRAGFKQKPVEAELVQLFREKMKKWGYHKDFVLDEDSNWFLQGWKGRILFSSSCWVPS 662          
BLAST of CX043946 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.690e-53
Identity = 92/138 (66.67%), Postives = 116/138 (84.06%), Query Frame = -2
Query:  425 FVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYH-KDFVIDQDNNWMLQGWKGRIVFASSCWVP 835
            F+  I++GSYNAPFFVTRFRE +FH+SSLFDM DT + REDP R+MFE+E YGRE MNV+ACEG ERVERPE+YKQWQAR +RAGF+Q+PL +EL++KL   +++ Y  K+F +DQD +W+LQGWKGRIV+ SS WVP
Sbjct:  556 FIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKELVQKLKLMVESGYKPKEFDVDQDCHWLLQGWKGRIVYGSSIWVP 693          

HSP 2 Score: 28.4906 bits (62), Expect = 1.690e-53
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = -1
Query:  834 VLKLIRKIKPDIF 872
            VLKLIRKIKPD+F
Sbjct:  544 VLKLIRKIKPDVF 556          
BLAST of CX043946 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.201e-53
Identity = 92/138 (66.67%), Postives = 118/138 (85.51%), Query Frame = -2
Query:  422 FVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 835
            F+ +I++G+YNAPFFVTRFREA+FH+S++FDM D+ + RED  RLM+E+E YGRE +NV+ACEG ERVERPETYKQWQAR IRAGF+QLPL +ELM+ L  K++  Y K+F +DQ+ NW+LQGWKGRIV+ASS WVP+
Sbjct:  630 FIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVNVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLKIENGYDKNFDVDQNGNWLLQGWKGRIVYASSLWVPS 767          

HSP 2 Score: 24.6386 bits (52), Expect = 2.201e-53
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = -1
Query:  834 VLKLIRKIKPDIF 872
            VLKLIRKI P++F
Sbjct:  618 VLKLIRKINPNVF 630          
BLAST of CX043946 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.146e-51
Identity = 91/137 (66.42%), Postives = 109/137 (79.56%), Query Frame = -2
Query:  425 FVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVP 835
            FV  IVNG+YNAPFFVTRFREA+FHFSS+FDM +T +PRED ER+  E EV+GREA+NVIACEG ERVERPETYKQW  R +R+G  Q+P +  +M+  + K+  +YHKDFVIDQDN W+LQGWKGR V A S W P
Sbjct:  578 FVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWKP 714          
BLAST of CX043946 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.310e-46
Identity = 83/140 (59.29%), Postives = 110/140 (78.57%), Query Frame = -2
Query:  422 FVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDP--ERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 835
            FV + +NG YN+PFF+TRFREA+FH+SSLFDMFDTT+  ED    R + ERE+  R+AM+VI+CEG ER  RPETYKQW+ R +RAGFK   +++++M++    ++  YH+DFVID DNNWMLQGWKGR+++A SCW PA
Sbjct:  461 FVFAEINGMYNSPFFMTRFREALFHYSSLFDMFDTTIHAEDEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWKPA 600          

HSP 2 Score: 22.3274 bits (46), Expect = 2.310e-46
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = -1
Query:  834 VLKLIRKIKPDIF 872
            VLKL R I PD+F
Sbjct:  449 VLKLFRDINPDLF 461          
BLAST of CX043946 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.280e-44
Identity = 81/138 (58.70%), Postives = 108/138 (78.26%), Query Frame = -2
Query:  422 FVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCWVPA 835
            FV + +NG+YN+PFF+TRFREA+FH SSLFDM++TT+  +D  R + ERE+  R+AM+VIACEG ER  RPETYKQWQ R +RAGF+   L++++++     +K  YHKDFVID DN+WM QGWKGR+++A SCW PA
Sbjct:  444 FVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWKPA 581          
BLAST of CX043946 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.073e-19
Identity = 43/125 (34.40%), Postives = 76/125 (60.80%), Query Frame = -2
Query:  431 NAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 805
            N   F+ RF E + ++S++F+  D  +PR++ ER+  E+    ++ +N+IACEG +RVER E   +W++R   AGF+  PL+   +  ++ KL A Y   + +D+ +  ML GW+ R + ++S W
Sbjct:  447 NTTPFLMRFGETMEYYSAMFESIDANLPRDNKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFRPYPLS-SYVNSVIRKLLACYSDKYTLDEKDGAMLLGWRSRKLISASAW 570          
BLAST of CX043946 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.742e-17
Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  431 NAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 805
            N   F  RF E + +++++F+  D T+PR+D ER+  E+    RE +N+IACEG ER ER E + +W+AR   AGF+  PL+  L+   +  L   Y  ++ + + +  +  GWK R +  SS W
Sbjct:  420 NTAPFPQRFAETLDYYTAIFESIDLTLPRDDRERINMEQHCLAREIVNLIACEGEERAERYEPFGKWKARLTMAGFRPSPLS-SLVNATIRTLLQSYSDNYKLAERDGALYLGWKSRPLVVSSAW 543          
BLAST of CX043946 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.972e-17
Identity = 45/138 (32.61%), Postives = 79/138 (57.25%), Query Frame = -2
Query:  431 LIFFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDTTMPREDPERLMFEREVYGREAMNVIACEGLERVERPETYKQWQARTIRAGFKQLPLNQELMEKLMGKLKAWYHKDFVIDQDNNWMLQGWKGRIVFASSCW 844
            L+  V   VN +  +PFF  RF EA  ++S++F+  D T+PRE  ER+  ER+   R+ +N++ACEG ER+ER E   +W+AR + AGF   P++ ++   +   +K  Y   + + ++   +   W+ + +  +S W
Sbjct:  457 LVTVVEQDVNTN-TSPFF-PRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAW 592          
The following BLAST results are available for this feature:
BLAST of CX043946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SCL34_ARATH1.612e-5566.91Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]
SCL31_ARATH8.000e-5567.63Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]
SCL33_ARATH1.690e-5366.67Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
SCL14_ARATH2.201e-5366.67Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
SCL9_ARATH3.146e-5166.42Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SCL11_ARATH2.310e-4659.29Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
SCL30_ARATH1.280e-4458.70Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
CIGR1_ORYSJ7.073e-1934.40Chitin-inducible gibberellin-responsive protein 1 ... [more]
CIGR2_ORYSJ1.742e-1736.00Chitin-inducible gibberellin-responsive protein 2 ... [more]
SCL1_ARATH2.972e-1732.61Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14D12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14D12-H24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043946 ID=CX043946; Name=CX043946; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTAATGAAATTTCAAATTTCACTTTCATTATTACTGAT
AGAACCAAAACACAACTAATGTAACTAAAGGAAATATTTACAGAAACAAA
AAGATGAGGTCTACACTGGAGTACCATCACAAACAGCCCCTGCAACAGAA
CTTAGGGGATTGGAGAATGTCCCCAAGCTTTTCTCTACCACATGAAGTTT
CTAAACCTATAATTGTCTACCACCAACATCATCAAGATAACCATACTTTG
CAGAGTGACCAACAAGCTTTAACCATACTACAGTAATTGCACGATCATCT
GCTGGTTTTTTTTTTTATTCACTGATGATAAACACCAGGTCAGGAATCTT
CATCCACTTCCCAGGTTATTCTTTCCTGACTGGTCCAGGAAAAATATCAT
ACCTCCCAATCACAACTCCGGCGCAGGTACCCAACAAGAGGAAGCAAAAA
CAATTCTCCCCTTCCATCCCTGCAGCATCCAGTTGTTGTCTTGATCAATT
ACAAAGTCCTTGTGGTACCAAGCCTTCAACTTACCCATAAGTTTCTCCAT
CAGCTCCTGGTTCAGTGGCAGCTGCTTAAACCCAGCCCTTATGGTCCGCG
CCTGCCACTGCTTGTATGTCTCAGGCCTCTCAACCCTCTCCAAGCCCTCG
CAGGCAATAACATTCATTGCCTCTCGCCCATAAACTTCTCTTTCAAACAT
CAACCTCTCTGGATCTTCACGGGGCATGGTAGTATCAAACATATCAAACA
GGGAAGAGAAGTGAAAGATTGCTTCACGAAATCTTGTGACAAAAAAAGGA
GCATTGTAGGACCCATTGACAATAGAATTGACAAAAAATATCAGGCTTTA
TCTTCCTGATTAGCTTCAAGAC
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