CX043933

Overview
NameCX043933
Unique NameCX043933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.645e-83
Identity = 142/180 (78.89%), Postives = 161/180 (89.44%), Query Frame = -3
Query:  245 MIRLFKVKEKQKEDAENNT-GGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAYFESNVRMALQGGYIGDEYF 781
            MI LFKVKEKQ+E A+N T GG  VKKQ AGELRLHKDI+ELNLP +C ISFPNG+DDLMNFEVSIKPD+GYY NGTFVF+F+V P+YPH+APKVKCKTKVYHPNIDLEGNVCLN+LREDWKPVLNINT+IYGL+HLFTEPN EDPLNHDAA +LRD+P  FE+NVR A+ GGY+G  +F
Sbjct:    1 MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLMNFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVRRAMTGGYVGQTFF 180          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.081e-78
Identity = 136/185 (73.51%), Postives = 161/185 (87.03%), Query Frame = -3
Query:  233 MIRLFKVKEKQKEDAENNTG--GTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAYFESNVRMALQGGYIGDEYFEPVM 781
            MI LFKVKEKQ+E++++N G   + VKKQ AGELRLHKDI+ELNLP++CKISFPNG++DLMNFEV+IKPDEGYY +G FVFSF+V  +YPH+APKVKCKTKVYHPNIDLEGNVCLN+LREDWKPVLNINT+IYGL+HLFTEPN+EDPLNH+AA +LRD+P  FE NVR A+ GG +G   F   M
Sbjct:    1 MIGLFKVKEKQREESQSNNGRGASTVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDLMNFEVTIKPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVRRAMMGGQVGQTSFPRCM 185          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.556e-60
Identity = 113/182 (62.09%), Postives = 143/182 (78.57%), Query Frame = -3
Query:  242 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAYFESNVRMALQGGYIGDEYFE 781
            MI+LF +K+++KE  E + GGT    KK  A +LR+ KDITELNLP+ C+I F +  DDL+NF++ I PDEG+Y+ G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  YFE
Sbjct:    1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDITELNLPKTCEIEFSD-HDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFE 179          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.694e-60
Identity = 113/182 (62.09%), Postives = 143/182 (78.57%), Query Frame = -3
Query:  242 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAYFESNVRMALQGGYIGDEYFE 781
            MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL+NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  YFE
Sbjct:    1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFE 179          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.694e-60
Identity = 113/182 (62.09%), Postives = 143/182 (78.57%), Query Frame = -3
Query:  242 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAYFESNVRMALQGGYIGDEYFE 781
            MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL+NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  YFE
Sbjct:    1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFE 179          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.694e-60
Identity = 113/182 (62.09%), Postives = 143/182 (78.57%), Query Frame = -3
Query:  242 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAYFESNVRMALQGGYIGDEYFE 781
            MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C ISF +  DDL+NF++ I PDEG+Y++G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  YFE
Sbjct:    1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFE 179          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.712e-60
Identity = 112/182 (61.54%), Postives = 142/182 (78.02%), Query Frame = -3
Query:  242 MIRLFKVKEKQKEDAENNTGGTP--VKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAYFESNVRMALQGGYIGDEYFE 781
            MI+LF +K+++KE  E + GGT    KK  A +LR+ KDI ELNLP+ C+I F +  DDL+NF++ I PDEG+Y+ G FVFSF+V   YPHD PKVKC+T VYHPNIDLEGNVCLN+LREDWKPVL IN+IIYGL +LF EPN EDPLN +AAE+L+++   FE NV+ +++GGYIG  YFE
Sbjct:    1 MIKLFSLKQQKKE--EESAGGTKGSSKKASAAQLRIQKDINELNLPKTCEIEFSD-HDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFE 179          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.239e-56
Identity = 104/180 (57.78%), Postives = 137/180 (76.11%), Query Frame = -3
Query:  242 MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAYFESNVRMALQGGYIGDEYFE 781
            MI+LF +K+ QK+D E    G+  KK  A +LR+ KDI ELNLP  C   FP+  +DL+NF++ I PDEG+Y++G FVF+F V   YPH+ PKVKC T+VYHPNIDL+GNVCLN+LREDW PVLNIN+I+YGL  LF EPN EDPLN +AA++L+ +   FE+NV+ A++GG +G+ YFE
Sbjct:    1 MIKLFTLKQ-QKKDGEQK--GSQQKKASAAQLRIQKDINELNLPNTCATDFPD-PNDLLNFKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMRGGCVGETYFE 176          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.406e-50
Identity = 94/183 (51.37%), Postives = 131/183 (71.58%), Query Frame = -3
Query:  233 MIRLFKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAYFESNVRMALQGGYIGDEYFEPVM 781
            M++++ +KEKQ  +     GG+  KK  A +LR+ KD++EL+LP   K  FP+ +D +MNFE++++PDEG+YQ G F FSF V P +PH+ PKVKC  KVYHPNIDLEGNVCLN+LREDWKPVL++N ++ GL +LF EPN  DPLN DAA  +  +   F+ NV+ ++ GG +  E F+ V+
Sbjct:    1 MLKIWSMKEKQAAE-----GGSAKKKVTAAQLRVQKDLSELSLPSTMKTHFPSAED-IMNFELTVRPDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVKHSMAGGSVAGERFDCVL 177          
BLAST of CX043933 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.528e-47
Identity = 89/179 (49.72%), Postives = 122/179 (68.16%), Query Frame = -3
Query:  233 FKVKEKQKEDAENNTGGTPVKKQCAGELRLHKDITELNLPEACKISFPNGQDDLMNFEVSIKPDEGYYQNGTFVFSFEVPPIYPHDAPKVKCKTKVYHPNIDLEGNVCLNVLREDWKPVLNINTIIYGLYHLFTEPNHEDPLNHDAAELLRDSPAYFESNVRMALQGGYIGDEYFEPVM 769
            F +K KQ  ++ +       K+    ELR  KDI E+ +P  C +SF +  +D++NF +SI P +G YQ+ TF F+  +P  YP+D PKV C T VYHPNIDLEG+VCLN+LR+DW PVLNI T+I+GL  LF EPN +DPLN DAA+L+ D+   FE+NVR +L+GGYI +  F  ++
Sbjct:   60 FSLKTKQSSESGS-------KRANPAELRAQKDIDEMEVPTGCAVSFKD-TNDILNFNLSITPTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQSLRGGYISNRQFPKLL 230          
The following BLAST results are available for this feature:
BLAST of CX043933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
RCE1_ARATH1.645e-8378.89NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UB12L_ARATH2.081e-7873.51Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC12_XENLA2.556e-6062.09NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE5.694e-6062.09NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN5.694e-6062.09NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN5.694e-6062.09NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC12_XENTR9.712e-6061.54NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_DROME2.239e-5657.78NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC12_YARLI1.406e-5051.37NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC12_DICDI5.528e-4749.72NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14D05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14D05-H10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043933 ID=CX043933; Name=CX043933; organism=Citrus sinensis; type=EST; length=816bp
CCGGGGCCCCCTTTTTTTTTTTGGAGTAACGTATCAACTCACAGCATAAC
ATCAGTATACTTTTGTGTAGGTTATACAGTTGGCGTTTTCAGGAGTTAAA
CCCTCATTTTAAGATCACAAGAGGAATGAATAGAAAGTACTAAAAGCTTT
CAATAACTTGTGCAAACCACGAGCATTCAAGTTACCAATAACATTGTGTC
AGTTGGCGCTGAGTTCTATGGAACAAAAGCTACATAACTGGCTCAAAATA
TTCGTCCCCTATATACCCACCTTGTAAAGCCATTCTCACGTTTGACTCAA
AATAAGCTGGGCTATCCCTCAACAATTCAGCAGCATCATGATTAAGGGGG
TCCTCATGATTTGGTTCCGTGAAAAGATGATATAATCCGTAAATAATAGT
GTTTATGTTGAGGACAGGCTTCCAATCTTCTCGTAAGACGTTGAGGCAAA
CATTTCCTTCCAAGTCAATATTTGGGTGGTAGACCTTGGTCTTACACTTA
ACCTTTGGTGCGTCATGTGGATAAATAGGGGGAACTTCAAAAGAGAACAC
AAATGTGCCATTTTGATAATATCCTTCATCAGGTTTGATTGAGACCTCAA
AATTCATTAAATCATCCTGGCCGTTGGGGAATGATATTTTGCAAGCTTCG
GGTAGGTTCAGCTCAGTGATATCTTTGTGAAGACGCAATTCCCCAGCGCA
TTGCTTTTTAACAGGTGTACCTCCTGTGTTATTCTCAGCATCTTCTTTCT
GTTTTTCCTTTACTTTAAATAGTCGAATCATATCTCCTACAACTGCACAA
AGAGAAACACCAAACA
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