DC900456

Overview
NameDC900456
Unique NameDC900456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1665 contig Csv1_Contig1665:617..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900456 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.335e-35
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 3 
Query:    6 ELASEELCKXYTKXFGIECRVGRFHNIYGPFGTWKGGREKAPAAFXRKXLTSTDKFEMWGDGLXTRSFTFIDEC 227
            +LA+EELCK YTK FGIECRVGRFHNIYGPFGTWKGGREKAPAAF RK LTSTD+FEMWGDGL TRSFTFIDEC
Sbjct:  172 KLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDEC 245
[Close]
BLAST of DC900456 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.655e-34
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 3 
Query:    6 ELASEELCKXYTKXFGIECRVGRFHNIYGPFGTWKGGREKAPAAFXRKXLTSTDKFEMWGDGLXTRSFTFIDEC 227
            +LA+EELCK YTK FGIECRVGRFHNIYGPFGTWKGGREKAPAAF RK  TSTD+FEMWGDGL TRSFTFIDEC
Sbjct:  179 KLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDEC 252
[Close]
BLAST of DC900456 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.655e-34
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 3 
Query:    6 ELASEELCKXYTKXFGIECRVGRFHNIYGPFGTWKGGREKAPAAFXRKXLTSTDKFEMWGDGLXTRSFTFIDEC 227
            +LA+EELCK YTK FGIECRVGRFHNIYGPFGTWKGGREKAPAAF RK  TSTD+FEMWGDGL TRSFTFIDEC
Sbjct:  179 KLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDEC 252
[Close]
BLAST of DC900456 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.214e-34
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 3 
Query:    6 ELASEELCKXYTKXFGIECRVGRFHNIYGPFGTWKGGREKAPAAFXRKXLTSTDKFEMWGDGLXTRSFTFIDEC 227
            +LA+EELCK Y K FGIECR+GRFHNIYGPFGTWKGGREKAPAAF RK  TSTD+FEMWGDGL TRSFTFIDEC
Sbjct:  178 KLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDEC 251
The following BLAST results are available for this feature:
BLAST of DC900456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME2_ORYSJ3.335e-3589.19GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME1_ORYSJ1.655e-3487.84GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI1.655e-3487.84GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME_ARATH8.214e-3485.14GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionDC900456 VSS Citrus sinensis cDNA clone VSSK005 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900456 ID=DC900456; Name=DC900456; organism=Citrus sinensis; type=EST; length=275bp
GGCACGAGCTTGCAAGTGAGGAGTTGTGTAAGCNCTACACGAAAGANTTT
GGAATTGAGTGTCGTGTTGGAAGATTCCACAATATTTATGGGCCTTTTGG
AACATGGAAAGGTGGAAGGGAAAAAGCTCCTGCTGCTTTTTNCCGAAAGN
TNCTTACTTCAACTGACAAGTTTGAGATGTGGGGAGATGGNCTTNAAACT
CGATCTTTCACCTTCATTGATGAATGTTTTNAGGTGTCCTCAGATTACGA
GANACTTTCCGNGGCCATTAACATG
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