CX043883

Overview
NameCX043883
Unique NameCX043883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2024 contig Csv1_Contig2024:460..1265. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043883 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.451e-23
Identity = 72/192 (37.50%), Postives = 100/192 (52.08%), Query Frame = -1
Query:  243 LFPQQAVFAPKNDTPNMIDSSLNK-------PAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPCDLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKPADSKSWL 797
            +FP+Q+ F+  + +    D  + K       P  Q+A +TIFYGG+V+ F+DF A+KA E++ LA+ GS+ S           A+  N+ +A   K    S  PV         EP   + P                  P S  C+LPIARR SLHRFLEKRKDRI ++APYQ++GSA A  KP  + +WL
Sbjct:   82 MFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTC------FTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEP---IQPN-----------------PASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPT-NPAWL 246          
BLAST of CX043883 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.451e-23
Identity = 77/201 (38.31%), Postives = 101/201 (50.25%), Query Frame = -1
Query:  228 NLFPQQAVFA------PKNDTPNMIDSSLN-KPAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRP-CDLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKP--ADSKSWLGLAAQ 800
            NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVI FNDF A+KA E++ LAS G++                 NS A                   K  T+   ++   +N +P+       E  Q    P  +LPIARR SLHRFLEKRKDR+ ++APYQ+   A A   P    + SWLGLAA+
Sbjct:   88 NLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTA-----------------NSLA-------------------KNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNPQTTGNMSWLGLAAE 252          
BLAST of CX043883 vs. ExPASy Swiss-Prot
Match: TIF6B_ARATH (Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 54/163 (33.13%), Postives = 79/163 (48.47%), Query Frame = -1
Query:  300 SLNKPAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKS--PVESTPPVSPGPPKI--------LTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPCD-------LPIARRNSLHRFLEKRKDRIVARAPY 737
            S +KP    AQ+TIFY G V  ++D   +KA  IM LA NGSS+     + P Q   Q  +   AS+  S  P    P +S   P+          T+ +  +    ++    G+N+   C  P S   +       LP+AR+ SL RFLEKRK+R+ + +PY
Sbjct:  168 SSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSSMPQ--VFSPPQTHQQVVHHTRASVDSSAMPPSFMPTISYLSPEAGSSTNGLGATKATRGLTSTYHNNQANGSNI--NCPVPVSCSTNVMAPTVALPLARKASLARFLEKRKERVTSVSPY 326          
The following BLAST results are available for this feature:
BLAST of CX043883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TI10B_ARATH2.451e-2337.50Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10A_ARATH2.451e-2338.31Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TIF6B_ARATH4.794e-1133.13Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A07-B14-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043883 ID=CX043883; Name=CX043883; organism=Citrus sinensis; type=EST; length=806bp
ATTCATTGGGATTAACATTAACTAAATTTTCAATAAAGAAGTTAATTACA
TAAACTATTGGTAAGAAGAATGATCGTTAGATCTATGGTGGGCTCATCAA
AACCCAACCTAAAAGAAGATGGAAGATGAAGAAAAACGAAGCAAGGTTTA
TGTTTGCCAAAAAGACGATGACCGGCCAATAATCAGTCCCTAAAACTGGA
TGCAATTTGCACAAACTACTGTGAAGTTTGAGCAGCCAGGCCAAGCCATG
ACTTGCTATCAGCGGGCTTGTCTGGAGCCCCTGCTGAGCCATTCACTTGG
TACGGTGCTCTTGCAACAATCCTGTCTTTTCTCTTCTCCAAGAACCTGTG
GAGTGAATTTCTCCTTGCAATTGGTAGATCACAAGGTCTTGAGGGAGGTT
GAGCGCACTCTGGAATTAGATTGTTGCCAAAGTTAGGAATGCTATTTGAT
CGAGGAGGAACCGAGCAACTAGGCTCTGTTAGAATTTTTGGGGGGCCAGG
AGAAACCGGGGGAGTTGATTCAACTGGACTTTTGGGTAAACTAGCAGCAA
AAGAGTTGTAACCCTGGGCCGGCAGTTGCATAGGAGGATATGCGGTACCA
TGGCTCAGTGAGCTCCCGTTGCTTGCTAATTGCATGATTTCATTTGCTTT
ATCAGCAGGAAAATCATTGAACGCAATCACTTGTCCGCCATAAAATATAG
TCATTTGAGCAGTTTGCGGCGCGGGCTTGTTTAAACTTGAATCTATCATG
TTAGGGGTATCATTCTTAGGAGCAAAAACAGCTTGCTGAGGGAACAAATT
CATTGA
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