CX043879

Overview
NameCX043879
Unique NameCX043879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3608 contig Csv1_Contig3608:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043879 vs. ExPASy Swiss-Prot
Match: LONH1_ARATH (Lon protease homolog 1, mitochondrial OS=Arabidopsis thaliana GN=LON PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.881e-96
Identity = 180/246 (73.17%), Postives = 198/246 (80.49%), Query Frame = 2
Query:    2 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEAT 739
            LLDEIDKTGSDVRGDPASALLEVLDPEQNK+FNDHYLNVP+DLSKV+FVATANR QPIPPPLLDRME+IELPGYT EEKL+IAMRHLIPRVLDQHGL SEFL+IPEAMVK +IQRYTREAG                            P SKDV +L SPLL+ R+A+G EVEMEVIPMG + HE+  TF+  S LVVDE MLEK+LGPPRFDD EAA+RVA+ G+SVGLVWT FGGEVQFVEAT
Sbjct:  473 LLDEIDKTGSDVRGDPASALLEVLDPEQNKSFNDHYLNVPYDLSKVVFVATANRVQPIPPPLLDRMELIELPGYTQEEKLKIAMRHLIPRVLDQHGLSSEFLKIPEAMVKNIIQRYTREAG--VRSLERNLAALARAAAVMVAEHEQSLPLSKDVQKLTSPLLNGRMAEGGEVEMEVIPMGVNDHEIGGTFQSPSALVVDETMLEKILGPPRFDDSEAADRVASAGVSVGLVWTTFGGEVQFVEAT 716          
BLAST of CX043879 vs. ExPASy Swiss-Prot
Match: LONH1_SPIOL (Lon protease homolog 1, mitochondrial OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 2.299e-94
Identity = 176/246 (71.54%), Postives = 195/246 (79.27%), Query Frame = 2
Query:    2 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEAT 739
            LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVP+DLSKVIFVATAN+ QPIPPPLLDRMEVIELPGYTPEEK RIAM++LIPRV+DQHGL SEFLQI E MVKL+IQRYTREAG                              SKD H+  SP+ ++RLA+GAEVEMEVIPMG    E+SN  ++ SPL+VDE MLE VLGPPR+DDRE AERV+ PG+SVGLVWT FGGEVQFVEA+
Sbjct:  474 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPYDLSKVIFVATANKVQPIPPPLLDRMEVIELPGYTPEEKARIAMQYLIPRVMDQHGLSSEFLQISEDMVKLIIQRYTREAGVRNLERNLSALARAAAVKVAEQDNATAV--SKDFHQFTSPVEESRLAEGAEVEMEVIPMGVDNREISNALQVMSPLIVDETMLENVLGPPRYDDRETAERVSNPGVSVGLVWTAFGGEVQFVEAS 717          
BLAST of CX043879 vs. ExPASy Swiss-Prot
Match: LONH1_MAIZE (Lon protease homolog 1, mitochondrial OS=Zea mays GN=LON1 PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.141e-93
Identity = 177/246 (71.95%), Postives = 197/246 (80.08%), Query Frame = 2
Query:    2 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEAT 739
            LLDEIDKTGSDVRGDPASALLEVLDPEQNK FNDHYLNVPFDLSKVIFVATANR QPIPPPLLDRME+IELPGYTPEEKL+IAM+HLIPRVL+QHGL +  LQIPEAMVKLVI+RYTREAG                               K++  + + LLD+RLADG EVEMEVIPM    H++SNT+   SP++VDEAMLEKVLGPPRFDDREAA+RVA+PG+SVGLVWT+ GGEVQFVEAT
Sbjct:  474 LLDEIDKTGSDVRGDPASALLEVLDPEQNKAFNDHYLNVPFDLSKVIFVATANRMQPIPPPLLDRMEIIELPGYTPEEKLKIAMKHLIPRVLEQHGLSTTNLQIPEAMVKLVIERYTREAGVRNLERNLAALARAAAVKVAEQVKTLRL--GKEIQPITTTLLDSRLADGGEVEMEVIPM---EHDISNTYENPSPMIVDEAMLEKVLGPPRFDDREAADRVASPGVSVGLVWTSVGGEVQFVEAT 714          
BLAST of CX043879 vs. ExPASy Swiss-Prot
Match: LONP2_DANRE (Peroxisomal Lon protease homolog 2 OS=Danio rerio GN=lonp2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.843e-51
Identity = 111/256 (43.36%), Postives = 153/256 (59.77%), Query Frame = 2
Query:    2 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSKDVHRLGS--PLLDNRLADGAEVEMEVIPMGESTHEVSNTFRITS--------PLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEAT 739
            LLDE+DK G  ++GDPA+ALLEVLDPEQN +F DHYLNVPFDLS+V+F+ATAN    IPP LLDRMEV+++PGYT EEK+ IA RHLIP  L+QHGL  + LQIP+     +I +YTREAG                                   ++G+    +  ++A+G +V     P  +   + +++    S        P+V+D   L+ +LGPP F + E +ER+  PG+++GL WT  GGE+ FVEA+
Sbjct:  440 LLDEVDKLGKSLQGDPAAALLEVLDPEQNHSFTDHYLNVPFDLSQVLFIATANTTATIPPALLDRMEVLQVPGYTQEEKVEIAHRHLIPHQLEQHGLTPQQLQIPQDTTLQIISKYTREAGVRSLE-----------------------------RKIGAVCRAVAVKVAEGQKVSRSEAPTEQHAEQNTDSKVEDSGIAAPPEMPIVIDHVALKDILGPPLF-EMEVSERLTLPGVAIGLAWTPMGGEIMFVEAS 665          
BLAST of CX043879 vs. ExPASy Swiss-Prot
Match: LONP2_BOVIN (Peroxisomal Lon protease homolog 2 OS=Bos taurus GN=LONP2 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.362e-51
Identity = 111/250 (44.40%), Postives = 150/250 (60.00%), Query Frame = 2
Query:    2 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRIT----SPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEAT 739
            LLDE+DK G  ++GDPA+ALLEVLDPEQN  F DHYLNV FDLS+V+F+ATAN    IPP LLDRME+I++PGYT EEK+ IA RHLIP+ L+QHGL  + +QIP+     +I RYTREAG                                DV            A+G   +  ++  G+S   VS+T  +      P+++D   L+ +LGPP + + E +ER++ PG+++GL WT  GGE+ FVEA+
Sbjct:  440 LLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLSQVLFIATANTTASIPPALLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTPQQIQIPQVTTLDIITRYTREAGVRSLDRKLGAICRAVAVKVAEGQHREAKLDRPDV------------AEGEGCKEHLLEDGKS-DPVSDTTDLALPPEMPILIDFHALKDILGPPMY-EMEVSERLSQPGVAIGLAWTPLGGEIMFVEAS 675          
BLAST of CX043879 vs. ExPASy Swiss-Prot
Match: LONP2_MOUSE (Peroxisomal Lon protease homolog 2 OS=Mus musculus GN=Lonp2 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.560e-50
Identity = 109/250 (43.60%), Postives = 147/250 (58.80%), Query Frame = 2
Query:    2 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRIT----SPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEAT 739
            LLDE+DK G  ++GDPA+ALLEVLDPEQN  F DHYLNV FDLS+V+F+ATAN    IPP LLDRME+I++PGYT EEK+ IA RHLIP+ L+QHGL  + +QIP+     +I RYTREAG                                DV            ADG   +  V+        +S+T  +      P+++D   L+ +LGPP + + E +ER++ PG+++GL WT  GG++ FVEA+
Sbjct:  440 LLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLSQVLFIATANTTATIPPALLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTPQQIQIPQHTTLAIITRYTREAGVRSLDRKFGAICRAVAVKVAEGQHKEAKLDRSDV------------ADGEGCKEHVLE-DAKPESISDTADLALPPEMPILIDSHALKDILGPPLY-ELEVSERLSQPGVAIGLAWTPLGGKIMFVEAS 675          
BLAST of CX043879 vs. ExPASy Swiss-Prot
Match: LONP2_RAT (Peroxisomal Lon protease homolog 2 OS=Rattus norvegicus GN=Lonp2 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.539e-50
Identity = 109/249 (43.78%), Postives = 147/249 (59.04%), Query Frame = 2
Query:    2 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSKDVHRLGSPLLDNRLADGAEVEMEVI--PMGESTHEVSN-TFRITSPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEAT 739
            LLDE+DK G  ++GDPA+ALLEVLDPEQN  F DHYLNV FDLS+V+F+ATAN    IPP LLDRME+I++PGYT EEK+ IA RHLIP+ L+QHGL  + +QIP+     +I RYTREAG                                DV            ADG   +  V+     ES  + ++       P+++D   L+ +LGPP + + E +ER++ PG+++GL WT  GG++ FVEA+
Sbjct:  440 LLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLSQVLFIATANTTATIPPALLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTPQQIQIPQLTTLAIITRYTREAGVRSLDRKFGAICRAVAVKVAEGQHKEAKLDRSDV------------ADGEGCKEHVLEDAKPESIGDAADLALPPEMPILIDSHALKDILGPPLY-ELEVSERLSQPGVAIGLAWTPLGGKIMFVEAS 675          
BLAST of CX043879 vs. ExPASy Swiss-Prot
Match: LONP2_XENLA (Peroxisomal Lon protease homolog 2 OS=Xenopus laevis GN=lonp2 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.253e-49
Identity = 110/250 (44.00%), Postives = 146/250 (58.40%), Query Frame = 2
Query:    2 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRIT----SPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEAT 739
            LLDE+DK G  ++GDPA+ALLEVLDPEQN  F DHYLNV FDLS+V+F+ATAN    IPP LLDRMEV+E+PGY+ EEKL IA RHLI + L QHGL  E +QIP+     +I RYTREAG                              ++  HR      ++  A   E   E +P G  +  +++T         P+++D   L+ +LGPP + + E   R+  PG+++GL WT  GGE+ FVEA+
Sbjct:  444 LLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLSQVLFIATANTTATIPPALLDRMEVLEVPGYSQEEKLEIAHRHLISKQLAQHGLTPEQIQIPQEATLEIITRYTREAGVRSLDRKLGAICRAVAVKV-----------AEGQHR--EHKSEHLEAPEGEERKESVPEGSKSATINDTADFALPPEMPILIDHHALKDILGPPMY-ETEVFGRLNQPGVAIGLAWTPLGGEIMFVEAS 679          
BLAST of CX043879 vs. ExPASy Swiss-Prot
Match: LONP2_PONAB (Peroxisomal Lon protease homolog 2 OS=Pongo abelii GN=LONP2 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.253e-49
Identity = 109/250 (43.60%), Postives = 148/250 (59.20%), Query Frame = 2
Query:    2 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRIT----SPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEAT 739
            LLDE+DK G  ++GDPA+ALLEVLDPEQN  F DHYLNV FDLS+V+F+ATAN    IP  LLDRME+I++PGYT EEK+ IA RHLIP+ L+QHGL  + +QIP+     +I RYTREAG                              ++  H+     LD       E   E I   E    +S+T  +      P+++D   L+ +LGPP + + E ++R++ PG+++GL WT  GGE+ FVEA+
Sbjct:  440 LLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLSRVLFIATANTTATIPAALLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTPQQIQIPQVTTLDIITRYTREAGVRSLDRKLGAICRAVAVKV-----------AEGQHK--EAKLDRSDVTEREGCREHILEDEKPESISDTTDLALPPEMPILIDFHALKDILGPPMY-EMEVSQRLSQPGVAIGLAWTPLGGEIMFVEAS 675          
BLAST of CX043879 vs. ExPASy Swiss-Prot
Match: LONP2_HUMAN (Peroxisomal Lon protease homolog 2 OS=Homo sapiens GN=LONP2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.942e-49
Identity = 109/250 (43.60%), Postives = 148/250 (59.20%), Query Frame = 2
Query:    2 LLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLRIAMRHLIPRVLDQHGLGSEFLQIPEAMVKLVIQRYTREAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSKDVHRLGSPLLDNRLADGAEVEMEVIPMGESTHEVSNTFRIT----SPLVVDEAMLEKVLGPPRFDDREAAERVAAPGISVGLVWTNFGGEVQFVEAT 739
            LLDE+DK G  ++GDPA+ALLEVLDPEQN  F DHYLNV FDLS+V+F+ATAN    IP  LLDRME+I++PGYT EEK+ IA RHLIP+ L+QHGL  + +QIP+     +I RYTREAG                              ++  H+     LD       E   E I   E    +S+T  +      P+++D   L+ +LGPP + + E ++R++ PG+++GL WT  GGE+ FVEA+
Sbjct:  440 LLDEVDKLGKSLQGDPAAALLEVLDPEQNHNFTDHYLNVAFDLSQVLFIATANTTATIPAALLDRMEIIQVPGYTQEEKIEIAHRHLIPKQLEQHGLTPQQIQIPQVTTLDIITRYTREAGVRSLDRKLGAICRAVAVKV-----------AEGQHK--EAKLDRSDVTEREGCREHILEDEKPESISDTTDLALPPEMPILIDFHALKDILGPPMY-EMEVSQRLSQPGVAIGLAWTPLGGEIMFVEAS 675          
The following BLAST results are available for this feature:
BLAST of CX043879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
LONH1_ARATH1.881e-9673.17Lon protease homolog 1, mitochondrial OS=Arabidops... [more]
LONH1_SPIOL2.299e-9471.54Lon protease homolog 1, mitochondrial OS=Spinacia ... [more]
LONH1_MAIZE1.141e-9371.95Lon protease homolog 1, mitochondrial OS=Zea mays ... [more]
LONP2_DANRE1.843e-5143.36Peroxisomal Lon protease homolog 2 OS=Danio rerio ... [more]
LONP2_BOVIN5.362e-5144.40Peroxisomal Lon protease homolog 2 OS=Bos taurus G... [more]
LONP2_MOUSE1.560e-5043.60Peroxisomal Lon protease homolog 2 OS=Mus musculus... [more]
LONP2_RAT4.539e-5043.78Peroxisomal Lon protease homolog 2 OS=Rattus norve... [more]
LONP2_XENLA2.253e-4944.00Peroxisomal Lon protease homolog 2 OS=Xenopus laev... [more]
LONP2_PONAB2.253e-4943.60Peroxisomal Lon protease homolog 2 OS=Pongo abelii... [more]
LONP2_HUMAN2.942e-4943.60Peroxisomal Lon protease homolog 2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A05-B10-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043879 ID=CX043879; Name=CX043879; organism=Citrus sinensis; type=EST; length=739bp
GTTGCTTGATGAGATTGACAAGACGGGTTCTGATGTACGTGGAGATCCTG
CTTCAGCTCTGCTAGAGGTTCTTGACCCTGAGCAGAATAAAACATTCAAT
GATCACTATTTGAATGTCCCATTTGACCTTTCAAAGGTGATTTTTGTGGC
AACTGCAAACAGGGCGCAGCCCATTCCTCCACCGTTGTTAGACAGGATGG
AAGTCATTGAACTGCCTGGATATACACCTGAAGAAAAGCTTAGAATAGCC
ATGCGACATTTGATTCCACGAGTTCTGGATCAGCATGGGCTGGGATCTGA
ATTCCTTCAAATTCCTGAGGCTATGGTGAAACTTGTCATTCAGAGGTATA
CAAGGGAGGCTGGCGTTCGGAATCTTGAGAGGAACTTGGCTGCACTAGCT
CGTGCAGCAGCAGTTAAAGTTGCAGAGCAAGAGCAAGAGCAAGCTCTCCC
TTCGAGCAAAGATGTTCACCGGCTTGGTTCACCATTATTGGACAACCGGC
TAGCTGATGGAGCAGAAGTTGAAATGGAAGTCATTCCTATGGGTGAAAGT
ACTCATGAGGTATCCAACACATTCAGGATCACTTCACCTTTGGTTGTGGA
TGAGGCTATGCTGGAAAAAGTGTTGGGGCCTCCAAGGTTTGATGACAGAG
AAGCTGCTGAACGGGTGGCAGCTCCTGGAATATCTGTTGGGCTTGTCTGG
ACAAATTTTGGGGGGGAGGTCCAGTTTGTAGAGGCTACA
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