CX043878

Overview
NameCX043878
Unique NameCX043878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12674 contig Csv1_Contig12674:45..884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043878 vs. ExPASy Swiss-Prot
Match: LONH1_ARATH (Lon protease homolog 1, mitochondrial OS=Arabidopsis thaliana GN=LON PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.609e-55
Identity = 109/119 (91.60%), Postives = 115/119 (96.64%), Query Frame = -1
Query:  508 IHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGGCPWR-QHSKL 861
            IHFPAGAVPKDGPSAGVTLVTALVSLFS+KRVRADTAMTGEMTLRGLVLPVGG+KDKILAAHRYGIKRVILP+RN KDLVEVPAAVL+SLE+ILAKRMEDVLE AFEGGCPWR  +SKL
Sbjct:  770 IHFPAGAVPKDGPSAGVTLVTALVSLFSQKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPQRNSKDLVEVPAAVLSSLEVILAKRMEDVLENAFEGGCPWRNNYSKL 888          
BLAST of CX043878 vs. ExPASy Swiss-Prot
Match: LONH1_MAIZE (Lon protease homolog 1, mitochondrial OS=Zea mays GN=LON1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.696e-49
Identity = 97/118 (82.20%), Postives = 107/118 (90.68%), Query Frame = -1
Query:  508 IHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGGCPWRQHSKL 861
            IHFPAGAVPKDGPSAGVTLVTALVSLFS ++VRADTAMTGEMTLRGLVLPVGGVKDK+LAAHRYGIKRVILPERNLKDL EVP  +L+ +EI+L KR+E+VL+ AFEG CP R  SKL
Sbjct:  768 IHFPAGAVPKDGPSAGVTLVTALVSLFSNRKVRADTAMTGEMTLRGLVLPVGGVKDKVLAAHRYGIKRVILPERNLKDLSEVPLPILSDMEILLVKRIEEVLDHAFEGRCPLRSRSKL 885          
BLAST of CX043878 vs. ExPASy Swiss-Prot
Match: LONH1_SPIOL (Lon protease homolog 1, mitochondrial OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.643e-44
Identity = 91/99 (91.92%), Postives = 97/99 (97.98%), Query Frame = -1
Query:  565 IHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRME 861
            IHFPAGAVPKDGPSAGVTLVTALVSL S+KR+RADTAMTGEMTLRGLVLPVGGVKDK+LAAHRYGIKRVILPERNLKDLVEVP+AVL++LEII AKRME
Sbjct:  771 IHFPAGAVPKDGPSAGVTLVTALVSLLSQKRMRADTAMTGEMTLRGLVLPVGGVKDKVLAAHRYGIKRVILPERNLKDLVEVPSAVLSNLEIIYAKRME 869          
BLAST of CX043878 vs. ExPASy Swiss-Prot
Match: LONP2_DANRE (Peroxisomal Lon protease homolog 2 OS=Danio rerio GN=lonp2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.669e-36
Identity = 73/111 (65.77%), Postives = 91/111 (81.98%), Query Frame = -1
Query:  529 IHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGGCP 861
            +HFPAGAV KDGPSAGVT+VT L SL S + VR+D AMTGE+TLRGLVLPVGG+KDK+LAAHR  +KR+I+P+RN KDL E+PA V A L+ +LA  +++VL  AF+GG P
Sbjct:  718 LHFPAGAVTKDGPSAGVTIVTCLASLLSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRANLKRIIIPKRNEKDLEEIPANVRADLDFVLAGTLDEVLNAAFDGGFP 828          
BLAST of CX043878 vs. ExPASy Swiss-Prot
Match: LONP2_MOUSE (Peroxisomal Lon protease homolog 2 OS=Mus musculus GN=Lonp2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.821e-35
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = -1
Query:  529 IHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGGCP 861
            +HFPAGAV KDGPSAGVT+VT L SLFS + VR+D AMTGE+TLRGLVLPVGG+KDK+LAAHR G+K++I+P+RN KDL E+P+ V   L  + A  +++VL  AF+GG P
Sbjct:  730 LHFPAGAVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGLKQIIIPQRNEKDLEEIPSNVRQDLSFVTASCLDEVLNAAFDGGFP 840          
BLAST of CX043878 vs. ExPASy Swiss-Prot
Match: LONP2_BOVIN (Peroxisomal Lon protease homolog 2 OS=Bos taurus GN=LONP2 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.298e-35
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = -1
Query:  535 IHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 861
            +HFPAGAV KDGPSAGVT+ T L SLFS + VR+D AMTGE+TLRGLVLPVGG+KDK LAAHR G+KRVI+P+RN KDL E+PA V   L  I A  +++VL  AF+GG
Sbjct:  730 LHFPAGAVTKDGPSAGVTIATCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKALAAHRAGLKRVIIPQRNEKDLEEIPANVRQDLSFITASCLDEVLNAAFDGG 838          
BLAST of CX043878 vs. ExPASy Swiss-Prot
Match: LONP2_RAT (Peroxisomal Lon protease homolog 2 OS=Rattus norvegicus GN=Lonp2 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 9.037e-35
Identity = 70/109 (64.22%), Postives = 88/109 (80.73%), Query Frame = -1
Query:  535 IHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 861
            +HFPAGAV KDGPSAGVT+VT L SLFS + VR+D AMTGE+TLRGLVLPVGG+KDK+LAAHR G+K +I+P+RN KDL E+P+ V   L  + A  +++VL  AF+GG
Sbjct:  730 LHFPAGAVTKDGPSAGVTIVTCLASLFSGRLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGLKHIIIPQRNEKDLEEIPSNVKQDLSFVTASCLDEVLNAAFDGG 838          
BLAST of CX043878 vs. ExPASy Swiss-Prot
Match: LONP2_XENLA (Peroxisomal Lon protease homolog 2 OS=Xenopus laevis GN=lonp2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.629e-34
Identity = 72/109 (66.06%), Postives = 87/109 (79.82%), Query Frame = -1
Query:  535 IHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 861
            +HFPAGAV KDGPSAGV +VT L SLFS + V +D AMTGE+TLRGLVLPVGG+KDK+LAAHR G+KRVILP+RN  DL E+P  V   LE +LA  +++VL  AF+GG
Sbjct:  734 LHFPAGAVTKDGPSAGVAIVTCLASLFSGRLVCSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGLKRVILPKRNETDLEEIPLNVRQDLEFVLAGSLDEVLNAAFDGG 842          
BLAST of CX043878 vs. ExPASy Swiss-Prot
Match: LONP2_PONAB (Peroxisomal Lon protease homolog 2 OS=Pongo abelii GN=LONP2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.485e-34
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = -1
Query:  535 IHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFEGG 861
            +HFPAGAV KDGPSAGVT+VT L SLFS + VR+D AMTGE+TLRGLVLPVGG+KDK+LAAHR G+K+VI+P RN KDL  +P  V   L  + A  +++VL  AF+GG
Sbjct:  730 LHFPAGAVTKDGPSAGVTIVTCLASLFSERLVRSDVAMTGEITLRGLVLPVGGIKDKVLAAHRAGLKQVIIPRRNEKDLEGIPGNVRQDLSFVTASCLDEVLNAAFDGG 838          
BLAST of CX043878 vs. ExPASy Swiss-Prot
Match: LON2_MYXXA (ATP-dependent protease La 2 OS=Myxococcus xanthus GN=lonD PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 5.858e-34
Identity = 72/107 (67.29%), Postives = 85/107 (79.44%), Query Frame = -1
Query:  541 IHFPAGAVPKDGPSAGVTLVTALVSLFSRKRVRADTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPAAVLASLEIILAKRMEDVLEQAFE 861
            +HFPAG++PKDGPSAGVT++TAL SL +  RVR DTAMTGE TLRGLVLPVGG+K+K+LAAHR GIKRVILPER  KDL++VP      LE I    M+DVL+ A E
Sbjct:  689 LHFPAGSIPKDGPSAGVTILTALTSLLTGIRVRHDTAMTGEATLRGLVLPVGGIKEKVLAAHRAGIKRVILPERCRKDLIDVPDQARNELEFIFVTHMDDVLKAALE 795          
The following BLAST results are available for this feature:
BLAST of CX043878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
LONH1_ARATH4.609e-5591.60Lon protease homolog 1, mitochondrial OS=Arabidops... [more]
LONH1_MAIZE1.696e-4982.20Lon protease homolog 1, mitochondrial OS=Zea mays ... [more]
LONH1_SPIOL1.643e-4491.92Lon protease homolog 1, mitochondrial OS=Spinacia ... [more]
LONP2_DANRE3.669e-3665.77Peroxisomal Lon protease homolog 2 OS=Danio rerio ... [more]
LONP2_MOUSE1.821e-3563.96Peroxisomal Lon protease homolog 2 OS=Mus musculus... [more]
LONP2_BOVIN5.298e-3566.97Peroxisomal Lon protease homolog 2 OS=Bos taurus G... [more]
LONP2_RAT9.037e-3564.22Peroxisomal Lon protease homolog 2 OS=Rattus norve... [more]
LONP2_XENLA2.629e-3466.06Peroxisomal Lon protease homolog 2 OS=Xenopus laev... [more]
LONP2_PONAB4.485e-3464.22Peroxisomal Lon protease homolog 2 OS=Pongo abelii... [more]
LON2_MYXXA5.858e-3467.29ATP-dependent protease La 2 OS=Myxococcus xanthus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14A05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A05-B10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043878 ID=CX043878; Name=CX043878; organism=Citrus sinensis; type=EST; length=861bp
TTTTTTTTTAACAGTAATAAACATCATTGATTTACACACTTCTCACAGAC
ACAAAATAAGATGAACAATCCAATATTCGTCTGCTCACAGTTTATACACA
ACAACGGAGCAGTTGATACCGAGCAATTGTTTATATTTACACCCGGAATT
TATAAATAAAATTGAAAACAAGAAGATACTTGGGAGGAAGACAGACGCCT
TTTGTCAGTAAATGCAGCTCCACTAAAATATTGAAAACACGTGCCGAGAT
TTCCAATTGGAACTTCAAGAGGAACATATTCGGCAAAGCCCCTTTGCATG
AGCAGTTAATCCAGCCATTGCTTCTGCACCATTATCCGGAATCCATTCAT
CTCATTAACAATTTCTTTGATCTCCGATTGCTCGAGGCAAGAGCTACCTG
AAACACTACTGTGGGCCCAAAACAATGAGTGAAATGTGGTCACAAGCAAA
ACAATGGAATCACCAGCGATGTAGACATGTGAGATTAAATCCCTTTAGGG
TTTGTCACAACTTCGAGTGTTGCCTCCAAGGGCAACCACCTTCAAATGCC
TGCTCTAAAACATCTTCCATCCGCTTAGCCAGGATAATCTCCAGACTGGC
CAGCACAGCTGCTGGCACTTCAACCAGGTCTTTCAGATTTCTCTCTGGCA
GAATAACTCTCTTGATACCATAACGATGAGCAGCCAATATCTTATCCTTG
ACACCACCAACAGGTAACACAAGACCCCTCAGAGTCATCTCTCCAGTCAT
TGCCGTGTCTGCTCTTACTCTTTTCCGACTAAACAATGAAACCAGGGCCG
TTACCAGAGTCACACCAGCAGAGGGCCCATCTTTGGGTACAGCCCCAGCG
GGAAAATGTAT
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