CX043875

Overview
NameCX043875
Unique NameCX043875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3607 contig Csv1_Contig3607:1..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043875 vs. ExPASy Swiss-Prot
Match: UBX2_SCHPO (UBX domain-containing protein 2 OS=Schizosaccharomyces pombe GN=ubx2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.660e-15
Identity = 60/244 (24.59%), Postives = 114/244 (46.72%), Query Frame = 2 
Query:    2 NEAVSQTISTNFIFWQVYDDTSEGKKVCTYYKLDSIPVVLVVDPITGQKMRSWCGMVQPESLLEDLVPFMDGGPREQHAKVSHKRPRGSSTTPQQKNKDKPDIENEELLQALAASM----ETIKXXXXXXXXXXXXXXXXKEETSATEKPAYPALPEEPKVDRSLLCRVGVRLPDGRRMQRNFLRTDPIQLLWSYCYSQLEGSEMKPFRLTHAIPGATKSLDYDSKLTFEDSGLANAMISVTWE 721
            +E+V + I  +F+F Q+ DD   G +   +Y + S P + ++DP TG++++ W     P   +  L  F++G   ++ +    K P G+ +   QK  +    E+E++ +A+AAS+     T +                 +     +     A  EEP    ++  R+ +R+P+G R  R F  TDP+  +++Y     EG++ +PF LT        SLD     T +++G+ N  +   ++
Sbjct:  197 DESVKEVIRAHFLFLQLLDDEEPGMEFKRFYPVRSTPHIAILDPRTGERVKEWSKSFTPADFVIALNDFLEGCTLDETS--GRKNPLGAKS---QKPVEAMS-EDEQMHKAIAASLGNGNSTTESQGESSSQQAESHGVADDTVHKIDSAECDA--EEPSPGPNVT-RIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVAEGADKQPFSLTFQRKSLWTSLD----STIKEAGIQNTALQFEFQ 427
The following BLAST results are available for this feature:
BLAST of CX043875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBX2_SCHPO7.660e-1524.59UBX domain-containing protein 2 OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_14A03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14A03-B6-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043875 ID=CX043875; Name=CX043875; organism=Citrus sinensis; type=EST; length=840bp
AAATGAAGCTGTTTCCCAAACTATTAGTACAAACTTTATCTTCTGGCAGG
TGTATGATGATACGAGTGAGGGCAAGAAAGTTTGCACCTATTATAAATTG
GATTCTATTCCTGTAGTTCTTGTCGTTGACCCAATCACAGGCCAAAAAAT
GCGTTCATGGTGTGGAATGGTTCAACCAGAGAGTTTGCTTGAGGATCTAG
TACCTTTCATGGATGGTGGCCCGAGGGAACAACATGCAAAAGTTTCTCAT
AAACGTCCAAGAGGAAGTTCTACAACTCCTCAACAAAAGAATAAGGATAA
ACCCGATATAGAGAATGAGGAATTGCTGCAGGCACTAGCAGCTTCCATGG
AAACCATAAAAGATGCCAGTGGAGTATCTTCCAGTGATACAGATGTAGCG
AGTACTGACAAGGAGGAAACATCGGCCACTGAGAAGCCTGCATATCCTGC
ACTTCCTGAAGAACCCAAGGTCGATAGAAGCCTCCTTTGCCGGGTCGGAG
TTCGTCTCCCTGATGGTCGTAGGATGCAGAGAAATTTCTTGCGTACAGAT
CCGATACAGCTACTATGGTCTTACTGCTATTCTCAACTAGAGGGATCTGA
GATGAAGCCATTTCGGTTGACGCATGCTATACCAGGGGCAACGAAGTCCC
TTGATTATGATAGCAAATTGACTTTCGAGGACTCAGGGCTTGCCAATGCT
ATGATCTCAGTTACTTGGGAATGAAAATTCATTGTGTCAGGCTGTGTGTT
TTAACAAGTTTCTTCAACTGCTGGAATCTTGGGCTAAGATTTTTGGCTTT
TGTTTATTATATGCTCTTTTTGGTTTCTTATGTTATGTAC
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